A utility for loading data from repositories of BEL documents with PyBEL [1].
bel_repository
can be installed from PyPI with the following command:
$ pip install bel-repository
The latest version can be installed from GitHub with:
$ pip install git+https://github.com/pybel/bel-repository.git
from typing import Mapping
from bel_repository import BELRepository
from pybel import BELGraph
# Build a repository by giving a folder
bel_repository = BELRepository('/path/to/folder/with/bel/')
# Get a mapping from paths to graphs
graphs: Mapping[str, BELGraph] = bel_repository.get_graphs()
# Get a combine graph
graph: BELGraph = bel_repository.get_graph()
Each of these repositories has BEL content that can be pip installed:
- https://github.com/cthoyt/selventa-knowledge/
- https://github.com/pharmacome/conib
- https://github.com/hemekg/hemekg
- https://github.com/covid19kg/covid19kg
- https://github.com/neurommsig-epilepsy/neurommsig-epilepsy
More publicly available BEL content can be found in the listing in this blog post.
[1] | Hoyt, C. T., et al. (2017). PyBEL: a computational framework for Biological Expression Language. Bioinformatics (Oxford, England), 34(4), 703โ704. |