pvphaneuf / experiment_metadata Goto Github PK

This necessitates the selection of Sample Time as the variable to generate all files around.

Should then be able to drag and drop a file into the bottom area of the form and have multiple forms generated.

Stop hiding biological replicate field for ALE.

These should be auto-populated by names given in name CSV file for multiple files.

Folder structure:
/"PROJECT_DATE"
"samples.csv"
/"samples"
all sample metadata forms

This directory structure should be zipped up and downloaded as a single file.

Joon Ho:
"date format is somehow inconsistent. for example, run-date in 16_11_0_1.csv is expressed 16.4.9, but the run-date in 2_8_0_1.csv is expressed 4/9/2016.
Probably not a big deal, but if we are to parse massive amount of files automatically, this may be an issue."

"Sample Processing Date --> would have a calender" -zak

This could be used to associate a metadata to a read file that doesn't contain the AFIR serialization.

Have download example button in the header of the box for uploading names CSV.

Reuse "Download CSV" button implementation.

Seems unnecessary

Request from Zack.

This necessitates the selection of Antibiotic Concentration as the variable to generate all files around.

Should then be able to drag and drop a file into the bottom area of the form and have multiple forms generated.

This necessitates the selection of a field for entering arbitrary sample names as the variable to generate all files around.

Should then be able to drag and drop a file into the bottom area of the form and have multiple forms generated.

Currently only have a strain description

Read length isn't known until after the sequencing; scientist can enter it in upfront.

Two workflow currently, ALE and non-ALE. If non-ALE, hide the AFIR fields.

The PROJECT and LIB-TYPE values are 3 letter codes.