pughlab / imatrix-atezo_biomarker Goto Github PK
View Code? Open in Web Editor NEWMultimodal immunogenomic biomarker analysis of tumours from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab
License: Apache License 2.0
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imatrix-atezo_biomarker's Issues
Remove hard-coded paths
Notebook 01 begins with a series of hard-coded paths to "/Users/anabbi/OneDrive - UHN/Documents/". Need to replace these will relative paths that point to input files within the repository.
Readme needs a narrative that ties together the notebooks
Currently, it is not clear to a user how to get started and to navigate the 20 notebooks. A table showing which figures from the manuscript are generated by which notebook would help a reader jump to specific sections of interest in the repo.
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