public-health-bioinformatics / kipper Goto Github PK
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License: Other
command line versioning tool for large key-value text files
License: Other
Please help me understand the syntax for specifying the time when extracting by datetime. For example, using the test data, when I specify
kipper.py test.validate -e -d 2015-02-21T00:51:37 -o testdate
it extracts all the records, when it should stop at version 1.
Kipper has to sort an import database file by text key before it does its differential comparison. CURRENTLY there appears to be a bug in which, if the linux sort command fails - which can happen with large nr and nt databases if a drive runs out of space - kipper will continue as though input file was sorted. This leads to a bad update in which most of input file is inserted as new records.
This will be fixed shortly.
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