Comments (15)
As far as I can see this is a problem with rhub/cran, not the package itself... They might just ignore it on a submission.
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Is this when you check locally, or with winbuilder? If you get such a message on incoming, you will nearly certainly be asked to fix this.
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From my discussion with Oskar these files don't show up when building and checking locally on windows (with --as-cran)
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they still appear! I will reopen the issue until it's fixed
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Ok, when this doesn't show up when checked with https://win-builder.r-project.org/upload.aspx, it should be fine
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So, for me, the CRAN checks break already with the vignette, at
# TOADD a plot of richenss over time
load(file.path(datapath, "output/config_rte/sgen3sis.RData"))
#get total richness per time interval
rt <- colSums(sgen3sis$geo_richness[,-c(1,2)], na.rm = T)
#plot
plot(rt, type='l')
are you sure that this is running through? Regardless, to fix this, first thing I would do is to get the CI running (see #9), this will give you a good hint how things look on a clean system, and then we can take it from there.
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I will update the vignette. Never did CI, so happy to support you as you tell me.
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Vignette should be working now. I changed the output system but still had the old sgen3sis object on my package folder! Thanks for spotting this out. Should work now regarding the vignette. Let me know what I should do regarding the CI
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So, I don't get any of these non-standard files in my tests. Are you still getting this?
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I think this is something from your local computers - do you actually see these files? Have you tried just erasing them?
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I don't get this, but I'm on Ubuntu. Initially those files only showed up when checking with R-devel iirc...
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So, who exactly can reproduce this problem, and if someone can reproduce it, could you describe exactly the circumstances under which this occurs?
If no one can reproduce it, I guess we should close this!
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Oskar, check again if #25 is solved, I expect that this will be gone
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#25 is fixed. Thanks! Can we close this? What do you get on mac when checking on -as --CRAN?
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In never got a problem. Will close, you can re-open if this is showing up in any of the tests
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Related Issues (20)
- plot_summary fails if simulation ends before reaching step 0
- axis label for time series in summary plot is wrong
- specificy alternatives on plot_summary documentaiton regarding the sgen3sis.rds
- starting richness plots and range plots(pdfs) are not the same as when called for the first timestep in the call_observer function.
- multiple richenss plot with tag -1 when simulation starts with multiple species
- introduction vignette, richness plot
- versions history HOT 1
- Color palett of the ouput for color-blind people HOT 2
- misplaced loop_ecology() call HOT 1
- implement CI HOT 16
- South America distances missing HOT 4
- build package NOTE
- vignette problems in CRAN Should be corrected by 2021-10-19 to safely retain gen3sis on CRAN. HOT 1
- add colaborations file to git
- CRAN Fixes gen3sis 1.4 HOT 1
- add new check functions? HOT 1
- potential improvement of distance matrix calculation HOT 3
- NEWS version history HOT 1
- Check package for dependencies expiring soon. HOT 3
- accounting problem for speciation followed by extinction HOT 6
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