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fishbc's Introduction

fishbc

Lifecycle: stable R-CMD-check codecov License: CCBY4 CRAN status CRAN downloads

Introduction

fishbc is an R package that provides provides raw and curated data on the codes, classification and conservation status of freshwater fishes in British Columbia. Marine fishes will be added in a future release. It also include raw fish codes for BC Conservation Data Centre and the Government of Alberta.

It contains information licensed under the Open Government Licence – British Columbia and the Open Government Licence - Alberta

Installation

To install the latest release from CRAN

install.packages("fishbc")

To install the latest development version from GitHub

# install.packages("remotes")
remotes::install_github("poissonconsulting/fishbc")

Demonstration

Get the curated freshwater fish of BC fish codes.

library(tibble) # for tidy printing
fishbc::freshwaterfish
#> # A tibble: 161 × 18
#>    Code  CommonName  Class Order Family Genus Species Subspecies Species2 Extant
#>    <chr> <chr>       <chr> <chr> <chr>  <chr> <chr>   <chr>      <chr>    <lgl> 
#>  1 AF    All Fish    <NA>  <NA>  <NA>   <NA>  <NA>    <NA>       <NA>     TRUE  
#>  2 SP    Fish Unide… <NA>  <NA>  <NA>   <NA>  <NA>    <NA>       <NA>     TRUE  
#>  3 SG    Sturgeon (… Acti… Acip… Acipe… Acip… <NA>    <NA>       <NA>     TRUE  
#>  4 GSG   Green Stur… Acti… Acip… Acipe… Acip… mediro… <NA>       <NA>     TRUE  
#>  5 WSG   White Stur… Acti… Acip… Acipe… Acip… transm… <NA>       <NA>     TRUE  
#>  6 SH    American S… Acti… Clup… Clupe… Alosa sapidi… <NA>       <NA>     TRUE  
#>  7 SU    Sucker (Ge… Acti… Cypr… Catos… <NA>  <NA>    <NA>       <NA>     TRUE  
#>  8 LSU   Longnose S… Acti… Cypr… Catos… Cato… catost… <NA>       <NA>     TRUE  
#>  9 BSU   Bridgelip … Acti… Cypr… Catos… Cato… columb… <NA>       <NA>     TRUE  
#> 10 WSU   White Suck… Acti… Cypr… Catos… Cato… commer… <NA>       <NA>     TRUE  
#> # ℹ 151 more rows
#> # ℹ 8 more variables: Native <lgl>, Marine <lgl>, Yellow <lgl>, Blue <lgl>,
#> #   Red <lgl>, CDCode <chr>, ABCode <chr>, Ktunaxa <chr>

Get the common names for fish codes.

fishbc::fbc_common_name(c("AF", "WSG", NA, "AF", "NOTACODE"))
#> [1] "All Fish"       "White Sturgeon" NA               "All Fish"      
#> [5] NA

Contribution

Please report any issues.

Pull requests are always welcome.

Code of Conduct

Please note that the fishbc project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

fishbc's People

Contributors

evanamiesgalonski avatar joethorley avatar nadinehussein avatar newgraphenvironment avatar smnorris avatar

Stargazers

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Watchers

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Forkers

smnorris newgraphenvironment lucy-schick

fishbc's Issues

species_id

Thanks for publishing this, it is too bad it is not available via the Data Catalogue. Going forward, I'll grab WHSE_FISH.SPECIES_CD from this csv.

To make things a bit easier when querying by species in postgres, it would be nice to have a species_id column. I see there is already an integer column in https://github.com/poissonconsulting/fishbc/blob/master/data-raw/whse_fish_species_cd/whse_fish_species_cd.csv, it just lacks a name in the header. Would it be reasonable to label this column as species_id and use it as the primary key?

`cdc.csv` not up to date with BC Conservation Data Centre (CDC) fish data

The Bug

The data in cdc.csv is not up to date with the BC Conservation Data Centre (CDC).

A Reprex

Using Oncorhynchus nerka as an example, in the CDC database Oncorhynchus nerka and many of its populations have a COSEWIC status (screenshot 1), but this is not present in cdc.csv (screenshot 2).

Other information is not up to date either, including review dates and Provincial statuses, so this makes me think the cdc.csv just hasn't been updated in a while (and github says it hasn't been edited in 4 years). Any guidance on an update workflow would be much appreciated. Thanks

Screen Shot 2024-04-07 at 3 10 10 PM

Screen Shot 2024-04-07 at 3 15 27 PM

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