pinellolab Goto Github PK
Name: Pinello Lab
Type: Organization
Bio: Massachusetts General Hospital/Harvard Medical School
Location: Boston
Blog: pinellolab.org
Name: Pinello Lab
Type: Organization
Bio: Massachusetts General Hospital/Harvard Medical School
Location: Boston
Blog: pinellolab.org
Scripts for ACCESS-ATAC-seq data
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
Scripts for plots used in manuscript
Activity-normalized variant effect size estimation from pooled CRISPR screens
Helper utility function for running CRISPR-millipede pipelines
Repository contains the pipeline scripts and resources for running tools in the CRISPR-millipede suite at scale.
Perform CRISPR guide mapping and analysis that considers protospace self-editing and surrogate sensor sequences. Self-editing aware mapping takes a hamming-distance approach unbiased by expectations in editing patterns.
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Tool package to perform in-silico CRISPR analysis and assessment
Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements
Context specific and dynamic gene regulatory network reconstruction and analysis
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
DrugThatGene
GRAph-based Finding of Individual Motif Occurrences
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
MEGA TRajectories of clONes
Explore the effect of genetic variants on transcription factor binding sites
Formalizing and benchmarking open problems in single-cell genomics
Comparison of probablisitc programming languages in Python: PyStan, PyMC3, Edward, and Pyro
Analysis Framework for Pooled CRISPR Genome Editing Screens
repo to generate CRISPRme plots for paper
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
A python package for chromVAR
𝒫robabilistic modeling of RNA velocity ⬱
single cell data analysis for rms
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.