Potentially review overall design in light of the cGPS website.

Automates updating the version number, requires PhyloCanvas to be published to npm...

In 2.0.0, The internal and leaf boolean flags have been merged to a nodeType string property:

{
  text: 'Rotate Branch',
  handler: 'rotate',
  nodeType: 'internal'
}

User can select the features/plugins they wish to include and generate a js file, similar to http://jqueryui.com/download/ and http://getbootstrap.com/customize/.

This probably belongs in a separate project but would be accessed from the API site.

breakingchange

The API reference page should explicitly state properties and configuration options for Tree instances. Currently all are labelled configuration, which is incorrect.

• findLeaves returns a list of leaves and nothing else.
• updateLeaves allows multiple leaves to receive the same flag, while other leaves receive the opposite. Useful when selecting or highlighting multiple leaves.

Good to have a pdf download may be using jsPDF

Some tree tools seem to be producing hidden/illegal characters in newick files, trimming these off and accepting the file would help the users of these tools.

Fired by calling nodesUpdated(ids, property)

If a user saves a csv file on a Mac, it does not work. Only if it is saved as Windows or MS-DOS Comma Separated not if you save it as the Mac .csv. As this version inserts ^M into the file.

Proposing to unfix the footer and add contact details, subsequently removing the contact page.

Append URL and settings to query string, allows bookmarking

Under the Live Upload Page - some more instructions should be places, such as the format of the CSV file (only 1,0) and that a CSV is actually not mandatory to be uploaded etc.

Allows any flag to be updated. If cascading is not required the property should be changed directly.

Would be a good idea to keep these around for reference.

Request by John Lees to add iCandy-style metadata configuration to the app.