For future reference, commands used to regenerate the `renv.lock`:
# within R --vanilla, in an empty directory, in rocker/verse:4.0.5 container
install.packages("renv", repos = c("CRAN" = "https://cran.microsoft.com/snapshot/2021-03-31/"))
renv::init(bare = TRUE)
options(repos = c(
"CRAN" = "https://cran.microsoft.com/snapshot/2021-03-31/"
))
install.packages("devtools", repos = c("CRAN" = "https://cran.microsoft.com/snapshot/2021-03-31/"))
devtools::install_github("pharmaverse/admiral.test", dependencies = TRUE)
devtools::install_github("pharmaverse/admiraldev", dependencies = TRUE)
devtools::install_github("pharmaverse/admiral", dependencies = TRUE)
devtools::install_github("pharmaverse/admiralonco", dependencies = TRUE)
devtools::install_github("pharmaverse/admiraltemplate", dependencies = TRUE)
devtools::install_github("pharmaverse/admiralophtha", dependencies = TRUE)
devtools::install_github("openpharma/staged.dependencies", dependencies = TRUE)
options(repos = c(
"UPDATES" = "https://cloud.r-project.org",
"CRAN" = "https://cran.microsoft.com/snapshot/2021-03-31/"
))
# update packages which would otherwise be downgraded, compared to previous renv.lock file for R 3.6
install.packages("R.cache", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("R.utils", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("brio", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("bslib", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("callr", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("cli", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("cpp11", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("desc", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("downlit", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("ellipsis", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("evaluate", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("fs", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("gert", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("gh", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("glue", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("htmltools", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("jquerylib", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("knitr", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("lifecycle", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("magrittr", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("pkgdown", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("processx", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("ragg", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("rlang", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("rmarkdown", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("roxygen2", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("sass", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("styler", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("systemfonts", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("textshaping", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("tinytex", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("usethis", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("vctrs", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("withr", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("xfun", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("xml2", repos = c("UPDATES" = "cloud.r-project.org"))
install.packages("zip", repos = c("UPDATES" = "cloud.r-project.org"))
renv::snapshot(type = "all")
# manually remove admiral packages from renv.lock