Comments (1)
Completed in #198
from staramr.
Related Issues (20)
- Change sensitive to susceptible in report HOT 1
- Include drug resistances from PointFinder in StarAMR report HOT 1
- staramr db info error: [Errno 2] No such file or directory: 'mlst' HOT 4
- Available MLST scheme list is out of date HOT 4
- PlasmidFinder database enterobacteriaceae no longer an option HOT 1
- Include CGE-Predicted Phenotypes for PointFinder results HOT 3
- Include CGE-Predicted Phenotype results in summary results
- Error: multiple matches for gene=gyrA HOT 3
- AttributeError: 'float' object has no attribute 'split' HOT 5
- start and end position HOT 1
- ERROR: ('Error, plasmidfinder database type [{}] is either incorrect or plasmidfinder database not installed properly', 'enterobacteriaceae') HOT 2
- The plasmidfinder.tsv shows that there is no plasmid present HOT 4
- Duplicated resfinder hits with update to database HOT 5
- cant run staramr HOT 3
- an unexpected keyword argument "inplace" and can't out the "results.xlxs" HOT 3
- Update Plasmidfinder DB HOT 1
- Add PointFinder "Required_mut" column to pointfinder.tsv results HOT 1
- Add option to specify database path HOT 4
- different percent identity/alignment length for identical sequences on opposite strands HOT 5
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