Comments (3)
Thank you for reporting. We will try to find a fix for you.
from staramr.
Noting that this particular exception appears to exist in StarAMR version 0.8.0, but not in 0.9.0 and onwards.
from staramr.
This issue is fixed in the latest version of staramr. Test added in #192 to verify
from staramr.
Related Issues (20)
- ERROR: ('Error, plasmidfinder database type [{}] is either incorrect or plasmidfinder database not installed properly', 'enterobacteriaceae') HOT 2
- The plasmidfinder.tsv shows that there is no plasmid present HOT 4
- Duplicated resfinder hits with update to database HOT 5
- cant run staramr HOT 3
- an unexpected keyword argument "inplace" and can't out the "results.xlxs" HOT 3
- Update Plasmidfinder DB HOT 1
- Update StarAMR documentation HOT 1
- Add PointFinder "Required_mut" column to pointfinder.tsv results HOT 1
- Add option to specify database path HOT 4
- different percent identity/alignment length for identical sequences on opposite strands HOT 5
- ERROR: the local id is too long or OSError: [Errno 39] Directory not empty: 'input-genomes' HOT 3
- Update MLST references in README
- docker image v0.8.0 does not accept --user HOT 3
- conda install gets an old version which does not run well HOT 4
- AttributeError: type object 'object' has no attribute 'dtype' HOT 4
- Dashes in updated pointfinder db cause crash
- A Full Set of pbp5 Ampicillin Mutations are on the Threshold of the Default Percent Identity
- Adding more databases HOT 1
- CGE phenotype not populated for E. faecium pbp5 when all essential mutations are present HOT 1
- Add to GRDI-AMR.com HOT 2
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