peterdfields Goto Github PK
Name: peterdfields
Type: User
Company: University of Basel
Twitter: peterdfields
Blog: www.peterdfields.com
peterdfields's Projects
ngstools
Programs to analyse NGS data for population genetics purposes
parallel_snippets
pbalign
pbalign maps PacBio reads to reference sequences and saves alignments to a SAM or cmp.h5 file.
peterdfields.github.io
peterdfields.github.io_backup
popvae
genotype dimensionality reduction with a VAE
protocols
Sharbrough lab protocols
pyfasta_oneliners
quantinemo_taylor2010
radeontop
ragout
Chromosome-level scaffolding using multiple references
redmask
Genome assembly soft-masking using Red (REpeat Detector)
relernn
Recombination Landscape Estimation using Recurrent Neural Networks
rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments, including variant calling and more - relating to population genetics and insecticide resistance
rosalind_problem_sets
silene-invasive-data
snipre-input
Create input file needed to run the SnIPRE program (http://med.stanford.edu/bustamantelab/software.html)
stdpopsim
A library of standard population genetic models
toenshoff_fields_etal_2018_g3
training-course
Instructor training course
transpi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
tsmc
triploid SMC inference method
workshops
A collection of workshop material
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