Verify that the atlas and the template are in the same space with: scil_verify_space_attributes_compatibility.py
Create dataset tree from TractoFlow ouptut with: tree_for_bundle_segmentation.sh
Run with: run_bundle_segmentation.sh
Prebuild Singularity images: https://scil.usherbrooke.ca/pages/containers/
Brainnetome atlas in MNI space: https://atlas.brainnetome.org/download.html
FA template in MNI space: https://brain.labsolver.org/hcp_template.html
Tested locally on 2 subjects ses_v1
and remotely (Compute Canada) on 73 subjects ses_v1
, ses_v2
and ses_v3
.