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brainweb-dl's Introduction

Hello there ๐Ÿ‘‹,

I am Pierre-Antoine Comby, a.k.a @paquiteau

I am PhD Student at Neurospin, working on Deep Learning methods for reconstruction of functional MRI images.

Currently I am working on:

  • Variational Reconstruction Method for functional MRI
  • Patch-based denoising methods
  • Preprocessing of fMRI data
  • All of this mostly using, Python, Emacs and Archbtw

If you are really interested by me:

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brainweb-dl's Issues

Issue with package import

Hi Pierre-Antoine, thank you for providing this nice brainweb extension! :)

I wanted to check out the fuzzy segmentation but I am struggling a bit with the import of the python package, as I am getting the following error:

Traceback (most recent call last): File "D:\PycharmProjects\project\stuff.py", line 5, in <module> import brainweb_dl File "C:\User\Anaconda3\envs\ptenv2\lib\site-packages\brainweb_dl\__init__.py", line 2, in <module> from .mri import get_mri File "C:\User\Anaconda3\envs\ptenv2\lib\site-packages\brainweb_dl\mri.py", line 11, in <module> from ._brainweb import ( File "C:\User\Anaconda3\envs\ptenv2\lib\site-packages\brainweb_dl\_brainweb.py", line 87, in <module> class BrainWebTissueMap(Enum): File "C:\User\Anaconda3\envs\ptenv2\lib\site-packages\brainweb_dl\_brainweb.py", line 88, in BrainWebTissueMap v1 = Path(str(files("brainweb_dl.data") / "brainweb1_tissues.csv")) File "C:\User\Anaconda3\envs\ptenv2\lib\importlib\resources.py", line 147, in files return _common.from_package(_get_package(package)) File "C:\User\Anaconda3\envs\ptenv2\lib\importlib\_common.py", line 14, in from_package return fallback_resources(package.__spec__) File "C:\User\Anaconda3\envs\ptenv2\lib\importlib\_common.py", line 18, in fallback_resources package_directory = pathlib.Path(spec.origin).parent File "C:\User\Anaconda3\envs\ptenv2\lib\pathlib.py", line 1082, in __new__ self = cls._from_parts(args, init=False) File "C:\User\Anaconda3\envs\ptenv2\lib\pathlib.py", line 707, in _from_parts drv, root, parts = self._parse_args(args) File "C:\User\Anaconda3\envs\ptenv2\lib\pathlib.py", line 691, in _parse_args a = os.fspath(a) TypeError: expected str, bytes or os.PathLike object, not NoneType

Do you have any idea how to fix this?

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