Comments (4)
cdiener
commented on August 22, 2024
Looks like we missed a deprecation for the numpy type aliases. I will send in a fix. For now downgrading numpy to 1.24.x should work.
from cobrapy.
CNelias
commented on August 22, 2024
Still does not work after downgrading
from cobrapy.
cdiener
commented on August 22, 2024
That is weird because our CI runs with numpy=1.24.3 on Windows as well and all looks good there...
Can you fill out the rest of the issue template, specifically the output of python -c "import cobra; cobra.show_versions()"?
Thanks!
from cobrapy.
cdiener
commented on August 22, 2024
Diving a bit deeper, it looks like this was already fixed in #1153 last year. So updating cobrapy to the latest version (0.26.3) should fix this.
from cobrapy.
Related Issues (20)
- problems reading certain AGORA2 models HOT 3
- Can Not Open the SBML File HOT 4
- Give parameters to model.optimize()
- How to set the model solver HOT 1
- ContainerAlreadyContains error with the fastcc() HOT 3
- createMultipleSpeciesModel function can not find in cobrapy HOT 4
- SBML file not getting uploaded HOT 2
- How to perform relaxedFBA with cobrapy? HOT 1
- how to handle mixed-integer programming (MIP) problems with the glpk, cplex or/and gurobi solvers in python/with cobrapy? HOT 3
- Model valid but cannot be loaded HOT 2
- Flux-Samplig: Cannot escape sampling region, model seems to be numerically unstable. Reporting the model HOT 2
- Incompatibility with pydantic version 2 HOT 6
- gurobipy.Model.addConstr() DeprecationWarning HOT 4
- find_gene_knockout_reactions error HOT 1
- AttributeError: 'list' object has no attribute 'items' HOT 8
- Hello I am new to python and Cobra, i would be grateful if you can provide me with steps to open an XML file from the computer and/or from online database, i tried the commands on Cobra documentation but i can't apply it.
- upgrading dependency to allow pandas>=2.0 HOT 1
- [BUG] Biomodels web io access broekn due to redirects
- Adding new metabolites HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cobrapy.