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FROM centos/systemd
RUN yum makecache fast && yum install -y /usr/bin/python /usr/bin/python2-config sudo yum-plugin-ovl bash iproute ca-certificates && sed -i 's/plugins=0/plugins=1/g' /etc/yum.conf && yum clean all;

CMD ["/sbin/init"]

docker build -f Dockerfile.j2 --rm --no-cache -t omero .
docker run --privileged --name omero -v /Users/pwalczysko/omero/:/OMERO  -p 22 -p 4063:4063 -p 4064:4064 -p 4080:4080 -p 8080:80 -d omero
docker exec -it omero bash

[root@2dade2873d73 /]# LC_CTYPE=en_US.UTF-8
[root@2dade2873d73 /]# export LC_CTYPE
[root@2dade2873d73 /]# yum install --assumeyes python3-pip
[root@2dade2873d73 /]# ansible-playbook --become --connection=local -i hosts.yml playbook.yml
[root@2dade2873d73 /]# pip3 install --upgrade pip
[root@2dade2873d73 /]# pip install ansible
[root@2dade2873d73 dbs]# ansible-galaxy install -r requirements.yml
[root@2dade2873d73 dbs]# ansible-playbook --become --connection=local -i hosts.yml playbook.yml
....
....

TASK [ome.postgresql : postgres | initialise PostgreSQL cluster (skip if data directory already exists)] ***
fatal: [localhost]: FAILED! => {"changed": true, "cmd": ["/usr/pgsql-13/bin/postgresql-13-setup", "initdb"], "delta": "0:00:00.515375", "end": "2022-12-12 16:45:53.541899", "msg": "non-zero return code", "rc": 1, "start": "2022-12-12 16:45:53.026524", "stderr": "Failed to get D-Bus connection: No such file or directory", "stderr_lines": ["Failed to get D-Bus connection: No such file or directory"], "stdout": "failed to find PGDATA setting in postgresql-13.service", "stdout_lines": ["failed to find PGDATA setting in postgresql-13.service"]}

PLAY RECAP *********************************************************************
localhost                  :

FROM centos/systemd

CMD ["/sbin/init"] 

yum makecache fast && yum install -y /usr/bin/python /usr/bin/python2-config sudo yum-plugin-ovl bash iproute ca-certificates && sed -i 's/plugins=0/plugins=1/g' /etc/yum.conf && yum clean all
LC_CTYPE=en_US.UTF-8
export LC_CTYPE
yum install --assumeyes python3-pip
pip3 install --upgrade pip
pip install ansible

ansible-galaxy install -r requirements.yml
ansible-playbook --become --connection=local -i hosts.yml playbook.yml

...
2019-07-12 15:01:57,444 ERROR [          ome.services.util.DBPatchCheck] (      main)
***************************************************************************************
Error connecting to database table dbpatch. You may need to bootstrap.
See https://docs.openmicroscopy.org/latest/omero/sysadmins/server-upgrade.html
***************************************************************************************

org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [select currentversion, currentpatch from dbpatch order by id desc limit 1]; nested exception is org.postgresql.util.PSQLException: ERROR: relation "dbpatch" does not exist
  Position: 42
        at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTranslator.java:231) ~[spring-jdbc.jar:4.3.14.RELEASE]
...

bash-4.2$ ./omero admin diagnostics

================================================================================
OMERO Diagnostics (admin) 5.5.1-ice36-b122
================================================================================

Commands:   java -version                  1.8.0     (/bin/java)
Commands:   python -V                      2.7.5     (/bin/python)
Commands:   icegridnode --version          3.6.4     (/bin/icegridnode)
Commands:   icegridadmin --version         3.6.4     (/bin/icegridadmin)
Commands:   psql --version                 9.6.14    (/bin/psql)
Commands:   openssl version                1.0.2     (/bin/openssl)

Server:     icegridnode                    not started

Log dir:    /opt/omero/server/OMERO.server-5.5.1-ice36-b122/var/log exists
Log files:  Blitz-0.log                    36.0 KB       errors=2    warnings=3
Log files:  DropBox.log                    1.0 KB        errors=2    warnings=1
Log files:  FileServer.log                 341 B
Log files:  Indexer-0.log                  25.0 KB       errors=1    warnings=1
Log files:  MonitorServer.log              347 B
Log files:  PixelData-0.log                25.0 KB       errors=1    warnings=1
Log files:  Processor-0.log                15.0 KB       errors=4    warnings=8
Log files:  Tables-0.log                   16.0 KB       errors=4    warnings=8
Log files:  TestDropBox.log                n/a
Log files:  master.err                     31.0 KB       errors=1    warnings=2
Log files:  master.out                     empty
Log files:  Total size                     0.15 MB


Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/sbin:/bin:/usr/sbin:/usr/bin
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

Cannot list deployed applications.
OMERO data dir:'/OMERO'                       Exists? True	Is writable? True
OMERO temp dir:'/opt/omero/server/omero/tmp'  Exists? True	Is writable? True   (Size: 0)

JVM settings: Blitz-${index}                -Xmx595m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index}              -Xmx397m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index}            -Xmx595m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index}           -Xmx397m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions