This directory contains the code to train cancer-specifc models (using both RMTLR and BEMKL algorithms) on systems-based signatures of the tumor microenvironment. Using EASIER, these signatures can be derived.
mechanistic_biomarkers_immuno-oncology's Introduction
mechanistic_biomarkers_immuno-oncology's People
mechanistic_biomarkers_immuno-oncology's Issues
There is an error at Function "run_rmtlr"
There is an error at Function "run_rmtlr & rmtlr_test"
perform prediction
prediction_cv <- lapply(coef_values, function(X){rmtlr_test(prediction.X, X)})
--->
fit.pred <- t(matrix(as.matrix(Intercept), nrow = ncol(Slope), ncol = nrow(x.test.combo))
+ t(Slope) %*% t(as.matrix(x.test.combo[,rownames(Slope)])))
In the code above,
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 't': error in evaluating the argument 'x' in selecting a method for function 't': error in evaluating the argument 'x' in selecting a method for function 'as.matrix': undefined columns selected
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