QIIME 2 plugin for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.

Follow the QIIME 2 core distribution installation instructions at https://qiime2.org/ to install q2-longitudinal as part of the QIIME 2 analysis platform.

This is a QIIME 2 plugin. For details on QIIME 2 and tutorials demonstrating how to use this plugin, see the QIIME 2 documentation. Tutorials for this plugin can be found here.

API documentation can be found here.

For user support, see the QIIME 2 Forum. Bug reports and feature requests can also be made via a new issue.

QIIME 2 is an open-source project, and we are very interested in contributions from the community. Please see the contributing guidelines if you would like to get involved.

Bokulich NA, Dillon M, Zhang Y, Rideout JR, Bolyen E, Li H, Albert PS, Caporaso JG. 2018. q2-longitudinal: longitudinal and paired-sample analyses of microbiome data. mSystems 3:e00219-18. https://doi.org/10.1128/mSystems.00219-18