this one https://odahub.io/ontology/ontology.ttl

Additional command inspect , to inspect the input notebook and attach those info to the file itself, still using nb2rdf. Add those info in a different place to be added to the graph exported initially and insert also the ontology inside this graph

use internals of nb2rdf

it is possible, but quite hard, to make javascript library for fully dynamic exploring

I get this:

"""Error while generating the output graph:

Project version is outdated and a migration is required. Run renku migrate command to fix the issue.""

and when I migrate, the message does not go away. Could it be made so that in this case auto-reload still works?

through zenodo, olos

add minimal generic python code here to enable jupyter extension

also hover tip should be compatible with the arrow label

following https://github.com/oda-hub/smartsky/issues/29

plugin can be used to push. but it should be verified

Those from the ontology

It is pretty deceiving to have a plugin for a renku version of years ago.

Advances Domain

Mention the Domain this issue addresses, e.g.:

• UX
• resilience
• community-expanding feature

When running the params command, I get the following error:

 "file://~/renku-aqs-test-case/.renku/Mrk 421" does not look like a valid URI, I cannot serialize this as N3/Turtle. Perhaps you wanted to urlencode it?

Advances Domain

Mention the Domain this issue addresses, e.g.:

• UX
• resilience
• community-expanding feature

Use renku team tools and rdflib tools

following https://github.com/oda-hub/smartsky/issues/27

not just graph, but also list extracted from graph. to think about

As suggested from the team in UZH

Knowledge Graph Explorer: https://renkulab.io/projects/laura.kinkead/knowledge-graph-dashboard

visNetowrk: https://datastorm-open.github.io/visNetwork/

the library can be used in several places

1. MMODA frontend (for exploring the result context)
2. renku session (to help finding terms for developing workflow, and also for exploring context)
   a. with jupyterlab plugin
   b. with jupyter server plugin

I suggest to start with 2b and 2a

edit: to be clear 2a and 2b are alternative implementations of 2. 2b is easier (at least for me it's clear how to do, it's mostly python). 2a has a potential to be nicer but it's a bit of a new teritory. But I saw many jupyter lab plugins and the sdk seems simple enough. So we could explore 2a, and if it hard - resort to 2b. and then if we like the use case - put more effort to implement 2a.
if 2a is not too hard - we can do it without 2b.

as suggested in #10 by @vigsterkr

there's a little tool that adds some additional info of a notebook: https://github.com/agoose77/jupyterlab-knowledge-graph

we should also make RTD

Advances Domain

Mention the Domain this issue addresses, e.g.:

• UX
• resilience
• community-expanding feature

see nbinspect from nb2workflow

From a fresh virtual environment running python 3.10, I installed renku 2.2.0 and then renku_aqs.

After installing the plugin, renku is giving this error that prevents any further use. I have to redo the virtualenv to get rid of the issue.

renku --version
WARNING:nb2workflow.ontology:unable to import odakb.sparql (No module named 'odakb') but proceeding anyway
WARNING:nb2workflow.ontology:unable to import owlready2: No module named 'owlready2'
Traceback (most recent call last):
File "/home/ferrigno/.venv/renkuVE/bin/renku", line 5, in
from renku.ui.cli import cli
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/ui/cli/init.py", line 99, in
from renku.ui.cli.dataset import dataset
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/ui/cli/dataset.py", line 825, in
@add_provider_options()
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/ui/cli/dataset.py", line 808, in add_provider_options
providers = [p for p in ProviderFactory.get_add_providers() if p.get_add_parameters()] # type: ignore
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/core/dataset/providers/factory.py", line 49, in get_add_providers
return [p for p in ProviderFactory.get_providers() if issubclass(p, AddProviderInterface)]
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/core/dataset/providers/factory.py", line 43, in get_providers
providers = get_supported_dataset_providers()
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/core/plugin/dataset_provider.py", line 43, in get_supported_dataset_providers
pm = get_plugin_manager()
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renku/core/plugin/pluginmanager.py", line 41, in get_plugin_manager
pm.load_setuptools_entrypoints("renku")
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/pluggy/_manager.py", line 287, in load_setuptools_entrypoints
plugin = ep.load()
File "/usr/lib/python3.10/importlib/metadata/init.py", line 171, in load
module = import_module(match.group('module'))
File "/usr/lib/python3.10/importlib/init.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renkuaqs/init.py", line 28, in
import renkuaqs.graph_utils as graph_utils
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renkuaqs/graph_utils.py", line 32, in
from renkuaqs.plugin import AQS
File "/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/renkuaqs/plugin.py", line 35, in
from aqsconverters.io import AQS_DIR, COMMON_DIR
ImportError: cannot import name 'AQS_DIR' from 'aqsconverters.io' (/home/ferrigno/.venv/renkuVE/lib/python3.10/site-packages/aqsconverters/io.py)

trying to upgrade aqsconverters did not help

e.g. SkyImage, spectrum

e.g. here https://github.com/oda-hub/renku-graph-vis

astro details can still be in https://github.com/oda-hub/renku-graph-vis just in "example" directory or something, i.e. in a more modular way

also we'll need there a manual how to use and extend for new grphs

also collapsible view of the ttl in the interface

try https://pypi.org/project/sqlparse/ to parse adql