This new S25 term is needed to support the creation of e.g. nvs-vocabs/P01#47

The following new codes have been queued for publication on the NVS
BE009482 Salmo trutta (ITIS: 161997: WoRMS 127187) [Stage: smolt]
BE009481 Salmo salar (ITIS: 161996: WoRMS 127186) [Stage: smolt]

Related to nvs-vocabs/P01#52

http://vocab.nerc.ac.uk/collection/S25/current/BE010301 Aequipecten opercularis (ITIS: 79716: WoRMS 140687) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010315 Callista chione (ITIS: 205643: WoRMS 141906) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010317 Cerastoderma edule (ITIS: 80901: WoRMS 138998) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010310 Crassostrea gigas (ITIS: 79868: WoRMS 140656) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010318 Crepidula fornicata (ITIS: 72623: WoRMS 138963) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010303 Donax trunculus (WoRMS 139602) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010321 Glycymeris glycymeris (ITIS: 79429: WoRMS 140025) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010306 Glycymeris glycymeris (ITIS: 79429: WoRMS 140025) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010314 Mimachlamys varia (WoRMS 236719) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010322 Mimachlamys varia nivea (WoRMS 393741) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010302 Mytilus (ITIS: 79452: WoRMS 138228) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010319 Mytilus edulis (ITIS: 79454: WoRMS 140480) [Subcomponent: gill]
http://vocab.nerc.ac.uk/collection/S25/current/BE010316 Mytilus edulis (ITIS: 79454: WoRMS 140480) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010307 Pecten maximus (ITIS: 79683: WoRMS 140712) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010320 Pecten maximus (ITIS: 79683: WoRMS 140712) [Subcomponent: muscle tissues and gonads]
http://vocab.nerc.ac.uk/collection/S25/current/BE010312 Polititapes rhomboides (WoRMS 745846) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010308 Polititapes rhomboides (WoRMS 745846) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010324 Ruditapes (WoRMS 231748) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010323 Ruditapes decussatus (WoRMS 231749) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010309 Ruditapes philippinarum (WoRMS 231750) [Subcomponent: hepatopancreas]
http://vocab.nerc.ac.uk/collection/S25/current/BE010304 Spisula (ITIS: 80943: WoRMS 138159) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010305 Spisula solida (ITIS: 80949: WoRMS 140301) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010311 Venus verrucosa (ITIS: 81594: WoRMS 141936) [Subcomponent: flesh]
http://vocab.nerc.ac.uk/collection/S25/current/BE010313 Venus verrucosa (ITIS: 81594: WoRMS 141936) [Subcomponent: hepatopancreas]

Zostera is a small genus of widely distributed seagrasses, commonly called marine eelgrass, or simply seagrass or eelgrass

In the explanation of how the biological entity concepts are defined https://github.com/nvs-vocabs/S25/ the table shows all the qualifiers, but is missing the biological-name/taxon. It might be 'obvious' but I think the documentation would be improved by adding that column on the left.

Maybe also indicate which qualifiers are 'optional' (all of them?)

I cannot see why we chose to use the term "aloricate organisms" instead of "aloricate ciliates" for http://vocab.nerc.ac.uk/collection/S25/current/BE005896/
http://vocab.nerc.ac.uk/collection/S25/current/BE005897/
http://vocab.nerc.ac.uk/collection/S25/current/BE005898/

Hence why I am proposing to correct the label to make it more explicit that these are "ciliates", a non-scientific name that does not perfectly align to the taxoomic groupings specially when considering aloricate organisms, but a name that is widely used in scientific literature and in model studies.

For references see e.g. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154192/

Halophila decipiens
Aphia ID: 145713
ITIS: 38961

Two new biological entities have been created for:
BE009241 Scomber scombrus (ITIS: 172414: WoRMS 127023) [Stage: eggs]
BE009242 Trachurus trachurus (ITIS: 168588: WoRMS 126822) [Stage: eggs]
They will be published in the NVS at 0200UT.

This term is required to support the creation of nvs-vocabs/P01#106

In relation to nvs-vocabs/ereefs#19
we need 3 new biological entities as follows:
One for just "seagrass" or "seagrasses"
One for "seagrass [Subgroup: Halophila decipiens type]"
One for "seagrass [Subgroup: Halophila ovalis type]"

@JordanAthertonNOC assigning this to you?

We need 2 new S25 entries for:
Salmo salar (ITIS: 161996: WoRMS 127186 )[Stage: adult]
Salmo trutta (ITIS: 161997: WoRMS 127187)[Stage: adult]
in relation to request: nvs-vocabs/P01#77

Three new terms required. To be created as:
Clupea harengus (ITIS: 161722: WoRMS 126417) [Sex: female Subcomponent: muscle tissue]
Clupea harengus (ITIS: 161722: WoRMS 126417) [Sex: female Subcomponent: bile]
Platichthys flesus (ITIS: 172894: WoRMS 127141) [Sex: female Subcomponent: bile]

Existing S25 codes can be used as a base:
BE006620 | Clupea harengus (ITIS: 161722: WoRMS 126417) [Subcomponent: muscle tissue]
BE001319 | Clupea harengus (ITIS: 161722: WoRMS 126417)
BE007113 | Platichthys flesus (ITIS: 172894: WoRMS 127141) [Sex: female]

S10 to use is S102 - female
S12 to use is S1234 - bile

associated with P01 request: https://jira.ceh.ac.uk/browse/BODCNVS-1384

This new term needs to be added to S25 to support the creation of nvs-vocabs/P01#43
The term "macroalgae" refers to species of multicellular macroscopic algae found in marine or freshwater environments. They include epiphytic species. Marine macroalgae are also known as "seaweeds".

New term needed for the creation of nvs-vocabs/P01#46

Linked to request nvs-vocabs/P01#13

New S25 combinations are required for:
S25: Ulva (ITIS: 6559: WoRMS 144296) [Shape: blade; Subgroup: bloom]
S25: Ulva (ITIS: 6559: WoRMS 144296) [Shape: blade+filamentous; Subgroup: bloom]
S25: Ulva (ITIS: 6559: WoRMS 144296) [Shape: blade]}
S25: Ulva (ITIS: 6559: WoRMS 144296) [Shape: blade+filamentous]
S25: Ulva (ITIS: 6559: WoRMS 144296) [Subgroup: stranding]

In relation to nvs-vocabs/P01#190

This new term is to support the creation of two P01 terms for the eReefs project.

Description to align with the comment on AlgaeBase(https://www.algaebase.org/search/genus/detail/?genus_id=44603):
Blank and Trench (1986) proposed rejection of Zooxanthella Brandt as a confusing name widely applied to taxa not including its type. Currently "zooxanthellae" is used for endosymbiotic algae belonging to various taxa of chromophyte algae.

Some useful historical context for the classification of zooxanthellae is provided in section 4.2 of https://www.sciencedirect.com/science/article/pii/B9780123942821000016

Note while zooxanthellae are particularly associated with corals, there are other non-coral symbioses.

ITIS and APHIAID to set to 99999

S12 request for 'host tissue'): nvs-vocabs/S12#21

ITIS and APHIAID to set to 99999

New S12 required:
nvs-vocabs/S12#22

Halophila ovalis (ITIS: 38959: WoRMS 208930) (subcomponent: roots+rhizomes)
Halophila decipiens (ITIS: 38961: WoRMS 145713) (subcomponent: roots+rhizomes)
Zostera (ITIS: 39073: WoRMS 144233) (subcomponent: roots+rhizomes)

Halophila ovalis
ITIS: 38959
WoRMS: 208930

Would you please create Chamelea gallina (ITIS: 205649: WoRMS 141907) [Subcomponent: shell]?
I need it for a related P01 term of shell maximum length.

http://vocabdev.nerc.ac.uk/collection/S25/current/BE000278/ was erroneously labelled and linked to the "Anemone" genus from the plant kingdom. The following updates have been implemented:
Update the prefLabel from "Anemone" to "Anemonia"
Set the ITIS TSN to null and Update the Aphia_ID from null to https://www.marinespecies.org/aphia.php?p=taxdetails&id=100695

will affect http://vocabdev.nerc.ac.uk/collection/P01/current/NA15S00Z/

3 new biological entities have been added to the NVS S25 collection in relation to P01 NTR nvs-vocabs/P01#35

BE009221 | Corallium rubrum colonies (ITIS: 202513: WoRMS 125416) [Size: diameter >=7mm] |   | 2020-10-10
BE009222 | Corallium rubrum colonies (ITIS: 202513: WoRMS 125416) [Size: height >=100mm] |   | 2020-10-10
BE009223 | coralligenous colonies [Subgroup: with percentage necrosis >=10%] |   | 2020-10-10

New S25 terms for Clupea harengus membras, with sub-components liver and muscle tissue.

To be created as:
Clupea harengus membras (ITIS: 161726: WoRMS 234068) [Subcomponent: liver]
Clupea harengus membras (ITIS: 161726: WoRMS 234068) [Subcomponent: muscle tissue]

'membras' signifies herring deriving specifically from the Baltic Sea, so differs from the existing 'Clupea harengus' term.
https://www.marinespecies.org/aphia.php?p=taxdetails&id=234068
https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=161726#null

S09::S09119 - large

2 terms required for nvs-vocabs/P01#203:
biological entity specified elsewhere [Subgroup: fresh]
biological entity specified elsewhere [Subgroup: preserved]

Relies on: nvs-vocabs/S13#5

This will need to be added to the next upgrade of the biological semantic model.

S09::S09134 - small

S12 required:
nvs-vocabs/S12#25

benthic microalgae [subcomponent: intracellular reserve pool]
phytoplankton [Size: large, subcomponent: intracellular reserve pool]
phytoplankton [Size: small, subcomponent: intracellular reserve pool]
Trichodesmium (ITIS: 918: WoRMS 177604) [subcomponent: intracellular reserve pool]

This new S25 term is needs to support the creation of nvs-vocabs/P01#44

New S25s required for P01 request: nvs-vocabs/P01#186
Eucampia zodiacus f. cylindrocornis (WoRMS 553584)
Lennoxia faveolata (WoRMS 549205)
Bacillariophyceae (WoRMS 148899) [Size: 10-40um Morphology: Pennate]
Bacillariophyceae (WoRMS 148899) [Size: 40-80um Morphology: Pennate]
Bacillariophyceae (WoRMS 148899) [Size: >80um Morphology: Pennate]
Proboscia indica (WoRMS 345513)
Achradina pulchra (WoRMS 109716)
Achradina sulcata (WoRMS 576930)
Amphidinium stigmatum (WoRMS 109756)
Brachidinium capitatum (WoRMS 232115)
Tripos bigelowii (WoRMS 841188)
Ceratium declinatum var. angusticornum (WoRMS 847295)
Ceratium fusus var. fusus (WoRMS 422703)
Ceratium fusus var. seta (WoRMS 422704)
Ceratium fusus var. schuettii (WoRMS 597653)
Ceratium macroceros var. macroceros (WoRMS 422710)
Gonyaulax birostris (WoRMS 110011)
Gonyaulax digitale (WoRMS 110015)
Balechina coerulea (WoRMS 232737)
Gyrodinium britannicum (WoRMS 109843)
Karenia brevis (WoRMS 233015)
Karenia bicuneiformis (WoRMS 233014)
Karenia papilionacea (WoRMS 246593)
Karenia (WoRMS 231788) [Size: <20um]
Karenia (WoRMS 231788) [Size: >20um]
Lessardia elongata (WoRMS 232703)
Lingulodinium polyedra (WoRMS 233592)
Oxytoxum adriaticum (WoRMS 110079)
Oxytoxum coronatum (WoRMS 110086)
Oxytoxum curvatum (WoRMS 110090)
Oxytoxum longiceps (WoRMS 110099)
Oxytoxum punctulatum (WoRMS 110110)
Prorocentrum dactylus (WoRMS 110297)
Prorocentrum vaginula (WoRMS 232300)
Pyrocystis robusta (WoRMS 110334)
Scrippsiella + Pentapharsodinium + Ensiculifera
Dinoflagellata (WoRMS 146203) [Size: 10um Morphology: athecate]
Histioneis inclinata (WoRMS 109674)
Histioneis oxypteris (WoRMS 109679)
Histioneis variabilis (WoRMS 109686)
Azadinium caudatum (WoRMS 837075)
Azadinium caudatum var. margalefii (WoRMS 846290)
Margalefidinium catenatum (WoRMS 990878)
Cochlodinium lebourae (WoRMS 232668)
Corythodinium constrictum (WoRMS 248059)
Erythropsidinium agile (WoRMS 109905)
Kofoidinium pavillardii (WoRMS 109918)
Nematodinium torpedo (WoRMS 233113)
Podolampas spinifera (WoRMS 110202)
Protoperidinium curtipes+Protoperidinium crassipes (WoRMS 110215/110214)
Protoperidinium (WoRMS 109553) [Size: medium]
Protoperidinium globulus (WoRMS 232921)
Protoperidinium cerasus+Protoperidinium minutum(WoRMS 162749/110233)
Oscillatoria limosa (WoRMS 146554)
Oscillatoria tenuis var tenuis
Trichodesmium erythraeum (WoRMS 660919)
Pterosperma cristatum (WoRMS 376081)
Pterosperma undulatum (WoRMS 376084)
Prymnesiophyceae (WoRMS 115057) [Size: 10-25um Subcomponent: Coccospheres]
Calcidiscus leptoporus subsp. quadriperforatus (WoRMS 555946)
Discosphaera tubifera+Papposphaera lepida (WoRMS 573399/235968)
Emiliania huxleyi + Gephyrocapsa + coccospheres (5um) (WoRMS 115104/235823)
Syracosphaera + Coronosphaera [Stage: holococcolithophorid ]
Oolithotus fragilis+Oolithotus antillarum (WoRMS 235856)
Ophiaster hydroides+Ophiaster formosus (WoRMS 115099/235964)
Syracosphaera prolongata + Syracosphaera pirus (WoRMS )
Bacillariophyceae (WoRMS 148899) [Size: diameter 10-20um Morphology: centric]
Bacillariophyceae (WoRMS 148899) [Size: diameter 30-40um Morphology: centric]
Bacillariophyceae (WoRMS 148899) [Size: diameter >40um Morphology: centric]
Chaetoceros messanense (WoRMS 418509)

or Nucella lapillus (ITIS: 73297: WoRMS 140403) [Sex: Female, Subgroup: penis-bearing females]

related to: nvs-vocabs/P01#214
S13: nvs-vocabs/S13#7

New term needed for the creation of nvs-vocabs/P01#45

S12 required:
nvs-vocabs/S12#24

benthic microalgae [subcomponent: structural cellular components]
phytoplankton [Size: large, subcomponent: structural cellular components]
phytoplankton [Size: small, subcomponent: structural cellular components]
Trichodesmium (ITIS: 918: WoRMS 177604) [subcomponent: structural cellular components]

Would you please create Mytilus galloprovincialis (ITIS: 79456: WoRMS 140481) [Subcomponent: shell] ?
I need it for a related P01 term of shell maximum length.