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s12's Introduction

S12 - BODC parameter semantic model biological entity subcomponent terms

A controlled vocabulary defining terms related to parts of a biological organism (component of the what theme) in the BODC parameter semantic model.

Terms and mappings available from: http://vocab.nerc.ac.uk/collection/S12/current/

Search interface: https://www.bodc.ac.uk/resources/vocabularies/vocabulary_search/S12/

Request for new terms and ways to contribute

  • Request for new S12 terms can be made using this form

  • Reporting errors or suggestions for improving content can be submitted as regular issues in this repository or emailed to vocab.services-at-bodc.ac.uk.

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Contributors

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s12's Issues

NTR: Request for S12 tarsus

Required

Term name (PrefLabel)

tarsus

Definition

The bones or cartilages of the part of the foot between the metatarsus and the leg; also the foot of an insect or a crustacean, usually consisting of two to five joints.

Optional

NTR: Request for baleen

We have had a request for the addition of 'baleen' to S12 in order to create a mapping to the following ICES term: https://vocab.ices.dk/services/rdf/collection/MATRX/BA

The new term has now been created:

Code: S1261
Preferred label: baleen
Description: A series of fringed keratin plates located in the upper jaw of certain whale species' mouths. Baleen is used as a filter-feeding mechanism whereby food sources such as krill, copepods and small fish are filtered from seawater entering a whale's mouth.

The term will be published live on the NVS from 0730 UTC tomorrow morning.

NTR: Request for S12 nectophores

Required

Term name (PrefLabel)

nectophores

Definition

Also known as "swimming bells", nectophores are medusae that are specialized for moving a physonect siphonophore colony through the water. The region of the colony containing the nectophores is called the nectosome.

Optional

ORCID

gwemon

NTR: Request for S12 head

Required

Term name (PrefLabel)

head

Definition

The cephalic part of an organism, usually located at one end of the body, which contains the highest density of neurons, and often other sense organs.

Optional

NTR: Request for S12 metasome

Required

Term name (PrefLabel)

metasome

Definition

The posterior of the two or three main divisions of the body of certain invertebrates.

Optional

NTR: Request for S12 bill

Required

Term name (PrefLabel)

bill

Definition

A projecting mouthpart found mainly in birds but also in turtle and other animals consisting of two bony projections (upper and lower mandibules) covered by a keratinized sheath of skin.

Optional

Sources/references

https://en.wikipedia.org/wiki/Beak and other online resources e.g. https://www.britannica.com/science/beak

Synonym or acronym (AltLabel)

beak

Mapping to other terminologies

http://purl.obolibrary.org/obo/UBERON_0005094 (sameAs)

NTR: Request for S12 mantle

Required

Term name (PrefLabel)

mantle

Definition

Mantle, also called pallium, plural pallia, or palliums, in biology, soft covering, formed from the body wall, of brachiopods and mollusks; also, the fleshy outer covering, sometimes strengthened by calcified plates, of barnacles. (www.britannica.com)

Optional

ORCID

gwemon

NTR: Request for S12 prosome

Required

Term name (PrefLabel)

prosome

Definition

The anterior of the two or three main divisions of the body of certain invertebrates.

Optional

NTR: Request for S12 bell

Required

Term name (PrefLabel)

bell

Definition

The umbrella-shaped body part of a medusozoan Cnidaria (jellyfish). It can pulsate to provide propulsion.

Optional

Sources/references

mixed

NTR: Request for S12 claspers

Required

Term name (PrefLabel)

claspers

Definition

Pair of appendages under the abdomen of male cartilaginous fishes like sharks or rays, or at the end of the abdomen of a male insect, used to hold the female during copulation.

Optional

Sources/references

https://en.wikipedia.org/wiki/Clasper and other online resources; adapted from

Mapping to other terminologies

http://purl.obolibrary.org/obo/UBERON_0010516 (sameAs)

NTR: Request for S12 shoot

Required

Term name (PrefLabel)

shoot

Definition

Above ground part of plants consisting of any plant stem together with its appendages, leaves and lateral buds, flowering stems, and flower buds.

Optional

Sources/references

https://en.wikipedia.org/wiki/Shoot and seagrass anatomy descriptions

NTR: Request for S12 brown meat

Required

Term name (PrefLabel)

brown meat

Definition

A term used to refer to the flesh of crabs extracted from the main body cavity and consisting of the hepatopancreas (digestive gland) and reproductive organs.

Optional

Sources/references

BODCNVS-1408

NTR: Request for S12 carapace

Required

Term name (PrefLabel)

carapace

Definition

Bony or chitinous case or shield covering the back or part of the back of some animals turtles or crabs.

Optional

Sources/references

multiple

Mapping to other terminologies

http://vocab.nerc.ac.uk/collection/P21/current/MS1757/ (sameAs)http://purl.obolibrary.org/obo/UBERON_0008275

NTR: Request for S12 flesh and intravalvular liquid

Required

Term name (PrefLabel)

flesh and intravalvular liquid

Definition

The muscles, body and organs of a bivalve mollusc together with the liquid contained within the shells when the animal is tightly closed out of the water.

Optional

Sources/references

https://www.legislation.gov.uk/uksi/1992/3164/schedule/5/made?view=plain; https://food.ec.europa.eu/system/files/2018-12/biosafety_fh_guidance_community_guide_bivalve_mollusc_monitoring_en.pdf

NTR: Request for S12 wings

Required

Term name (PrefLabel)

wings

Definition

Paired structures which certain animals use to propel themselves in the air or water.

Optional

NTR: Request for S12 siphosome

Required

Term name (PrefLabel)

siphosome

Definition

The main stem of the nectosome which contains feeding, reproductive, defensive and buoyant zooids.

Optional

NTR: Request for S12 lower rostrum

Required

Term name (PrefLabel)

lower rostrum

Definition

The lower part of a two-part organism’s beak or beak-like projecting structure. The term is used in reference to cetaceans, crustaceans, cephalopods and some fishes.

Optional

Sources/references

adapted from https://en.wikipedia.org/wiki/Rostrum_(anatomy) and other online resources

NTR: Request for S12 central disc (BODCNVS-1115)

Required

Term name (PrefLabel)

central disc

Definition

The central body part of a starfish (Asteroidea) also known as sea star, containing the internal organs, and the mouth and anus, and from which arms arms radiate. The radius of the central disc is used as a standard biometric measurement in starfish studies.

Optional

Sources/references

multiple online resourceshttps://github.com/nvs-vocabs/P01/issues/74 (BODCNVS-1115)

NTR: Request for S12 starfish arm

Required

Term name (PrefLabel)

starfish arm

Definition

One of generally five (but in some species more) appendages of a starfish (also known as sea stars) that radiate from the central disc.

Optional

Sources/references

https://en.wikipedia.org/wiki/Starfishhttps://github.com/nvs-vocabs/P01/issues/73

NTR: Request for S12 upper rostrum

Required

Term name (PrefLabel)

upper rostrum

Definition

The upper part of a two-part organism’s beak or beak-like structure. The term is used in reference to cetaceans, crustaceans, cephalopods and some fishes.

Optional

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