RuntimeError: Could not establish path to dicom files in MacOS about pylidc HOT 6 CLOSED

I did that, it printed the correct path for the dataset. Along with that I deleted the previous .pylidcrc file and made a new one with the same details and that worked for me. Thanks a lot for your help !

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That's triggered when os.path.exists(...) returns False for the path in your config file. That means either:

1. The path in your .pylidcrc file isn't being read correctly
2. The path /Volumes/One Touch/Datasets/LIDC-IDRI/LIDC-IDRI isn't correct / doesn't exist

To debug, edit the file at ~/opt/anaconda3/lib/python3.9/site-packages/pylidc/Scan.py. Add a print statement at line 210 print(dicompath) to see what path is actually being tested to exist there.

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I added the print(dicompath) statement in ~/opt/anaconda3/lib/python3.9/site-packages/pylidc/Scan.py and ran the code again but it isn't printing any path. How should I proceed further ?

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Did you restart your ipython kernel after making the change to ensure the updated code is imported?

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Yes I did restart the kernel. Is the issue occurring because the dataset is stored in an external drive ?

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Is the issue occurring because the dataset is stored in an external drive ?

No. External drives work fine. There's one of two things going on right now:

1. The print statement isn't executing because it's not running the updated code; or
2. The print statement only looks like it's not doing anything because dicompath is blank or something.

Let's look into 2. Instead of print(dicompath), let's make it more obvious, by using print(f'The dicompath variable is: "{dicompath}"').

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