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new-pdb-inspector's Introduction

New PDB Depositons Inspector

Searches the PDB for new depositions.

Usage

Requirements

Python 3

and the following packages (all found in requirement.txt):

  • beautifulsoup4==4.6.0
  • cycler==0.10.0
  • matplotlib==2.0.2
  • numpy==1.13.1
  • pyparsing==2.2.0
  • pypdb==1.103
  • python-dateutil==2.6.1
  • pytz==2017.2
  • six==1.10.0
  • xmltodict==0.11.0

Notes to self

Step 1 - Get the data

  • fetch the new structures information
  • parse the data to json format
  • download the pdb file
  • make sure everything is well organized

Step 2 - Output the data

  • get the data in json format
  • print as table in webpage

Step 3 - Notify user

  • weekly, send an email to user to notify of new depositions

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