Comments (3)
You can try decreasing the following parameters:
val_batch_size: 1024
test_batch_size: 1024
However, the error message is a little weird here:
7.79 GiB total capacity; 2.46 GiB already allocated; 632.94 MiB free; 3.65 GiB reserved in total by PyTorch
This implies to me that there may be another process running on your GPU.
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Thanks. Would it be possible to catch this error and issue a more informative message such as this?
RuntimeError: CUDA out of memory. Tried to allocate 714.00 MiB (GPU 0; 7.79 GiB total capacity; 2.46 GiB already allocated; 632.94 MiB free; 3.65 GiB reserved in total by PyTorch)
Consider reducing the value of val_batch_size and test_batch_size.
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It's not super nice design because the error would need to be caught at a very high level, basically in the outermost main function. Additionally, we'd need to string match the error message to figure out when catching a RuntimeError to check whether it matches a GPU OOM, which is a bit iffy.
I think the message is reasonably informative, and I'd just add a note about it in the FAQ section.
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Related Issues (20)
- Using HDF5 file as train/val dataset leads to index out of bound error HOT 9
- No Models Saved, No Validation Loss Reported HOT 3
- Save final model HOT 1
- how to train casanovo v4 on huge dataset like massive-kb from scratch? HOT 3
- What is the criteria of saving the top k models in Casanovo version 4? HOT 1
- add additional inputs to encoder and decoder HOT 1
- Add contrastive loss term
- Implement bidirectional decoding HOT 1
- Add rotary embeddings
- mzTab validation
- Automate mzTab validation
- More information about the train/val/test split HOT 2
- WARNING: Skipped spectra with invalid precursor info HOT 1
- Export casanovo to torchscript/onnx HOT 1
- ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() HOT 3
- Make Casanovo produce Skyline compatible output
- 9-Species Benchmark Set: Data Preprocessing Step? HOT 5
- Migrating PeptideMass, PeptideDecoder, and PeptideEncoder from depthcharge v0.2.3 to casanovo HOT 3
- Is there a way to know which spectras are ITMS instead of FTMS? HOT 3
- Numpy release 2.0.0 breaks depthcharge dependency HOT 1
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