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nine428's Projects

blasr icon blasr

BLASR: The PacBio® long read aligner

bwa icon bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

canu icon canu

A single molecule sequence assembler for genomes large and small.

cutesv icon cutesv

Long read based human genomic structural variation detection with cuteSV

medaka icon medaka

Sequence correction provided by ONT Research

megalodon icon megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

poretools icon poretools

a toolkit for working with Oxford nanopore data

slow5lib icon slow5lib

slow5lib is a software library for reading & writing SLOW5 files.

slow5tools icon slow5tools

Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

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