Name: High-Performance Computing at the NIH
Type: Organization
Bio: Repositories for tools developed by the NIH HPC staff. These tools are made available here as a courtesy, without any guarantee of support
Location: Bethesda, MD, USA
Blog: https://hpc.nih.gov
biowulf_ray
Sample submit script for running ray on biowulf
gemscan
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
gpu4singularity
Add GPU support to your Singularity container!
hotnet2
HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
idep
Integrated Differential Expression and Pathway analysis
julia-for-scientific-computing
Materials for introductory Julia class
keras_demo
moved to https://github.com/NIH-HPC/singularity-examples/tree/master/keras
pbs2slurm
Translate PBS batch scripts to Slurm
portauthority
find a free TCP port
pyslurm
Python Interface to Slurm
python-in-hpc
Materials for a Python in HPC class
relion
Image-processing software for cryo-electron microscopy
rslurm
Submit R code to a Slurm cluster
singularity
Singularity: Application containers for Linux
singularity-def-files
definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster
singularity-examples
example singularity definition files and demos
singularity-tutorial
How to use Singularity!
singularityware.github.io
base documentation site for Singularity software
snakemake-class
Class materials for the NIH HPC snakemake class
snakemake_profile
Minimal snakemake profile for biowulf cluster
spark-slurm
Tool for running/managing ad hoc spark clusters on a Slurm cluster
swarm
Swarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.
tensorflow
moved to https://github.com/NIH-HPC/singularity-examples
toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
ximmer
Ximmer is a system for CNV calling on exome and targeted genomic sequencing
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
