ngcrawford / coloration Goto Github PK

Add a function to create an averaged plot of all the specs in a directory with a std/var brackets.

Hello Nick,

Could you please adjust the calculations for U, B, G, Y, and R for both the Macedonia and Endler methods so that the values do not overlap. Currently, B is calculated from 400 to 475nm and G is 475 to 525nm, so the 475nm value is used twice. I will send you an excel file with an example. Thank you.

Best regards,
T.J.

Add a function to create a png of mini plots of all the specs in a directory.

Hello Nick,

Could you possible add another calculation to your program? I am interested in calculating mean proportional brightness for each sample. The value can be calculated from the U, B, G, Y, and R values by summing those values and dividing by the total number of values that were used to calculate each U, B, G, and R value. I will send you an excel file example. Thank you.

Best regards,
T.J.

Hello Nick,

The wavelength column is unlabeled in the output file, which causes all of the sample names to be shifted to the left. It is an easy fix by hand if it is complicated to fix within the program. Can the wavelength measurements be changed to 4 significant figures?

Best regards,
T.J.

Perhaps with linear regression?

Hello Nick,

Below are a few minor issues:

1. The H and C calculations are mis-labelled. The labels need to be switched.

2. Samples with a "b" at the end (e.g., ljr.00137.Master.transmission.b) get labelled as ljr.00137.Master.transmission. If this stays consistent they are easy enough to find.

3. The last sample and values get an extra \ at end (e.g., ljr.00142.Master.transmission). This can be easily deleted in excel if it is difficult to change by code.

4. There are 229 values at end of upper row, which is the same number of values as the number of samples. I am not sure where these values came from. All of the sample files are accounted for and there are no duplicate numbers.

Thanks,
T.J.

Hello Nick,

I tried a few times and I keep getting the error message below when I try to load a folder into your program. Are you able to interpret this error message?

Thanks,
T.J.

Last login: Mon Aug 1 15:50:37 on ttys000
TJ-McGreevys-MacBook-Pro:~ tjmcgreevy$ cd /Users/tjmcgreevy/Documents/Anolis/Python_Code/Coloration
TJ-McGreevys-MacBook-Pro:Coloration tjmcgreevy$ git pull origin master
From https://github.com/ngcrawford/Coloration

• branch master -> FETCH_HEAD
  Already up-to-date.
  TJ-McGreevys-MacBook-Pro:Coloration tjmcgreevy$ ls
  BL_test01_6_20_11.csv Hd_Bkg_test01_6_22_11.csv
  BL_test02_6_21_11.csv README.markdown
  BL_test03_NoS_6_22_11.csv Spec Processor
  BLtest_6_16_11.csv Tail__Test01_7_01_11.csv
  Dwlp_Test01_7_4_11.csv spec.py
  GNU Licence test_data
  HdBk_Smth_7_12_11.csv web
  TJ-McGreevys-MacBook-Pro:Coloration tjmcgreevy$ python spec.py -i /Users/tjmcgreevy/Documents/Anolis/Python_Code/HeadBckgrnd_2001_2003_2009 -o HdBk_test_8_1_11.csv --header -p -s
  Traceback (most recent call last):
  File "spec.py", line 276, in
  data_set = main()
  File "spec.py", line 243, in main
  args = get_args()
  File "spec.py", line 36, in get_args
  if os.path.exists(os.path.abspath(args.in_dir)) != True:
  AttributeError: 'Namespace' object has no attribute 'in_dir'
  TJ-McGreevys-MacBook-Pro:Coloration tjmcgreevy$

Hello Nick,

Your program is still deleting the first file name in the python window output for the Endler and Macedonia calculated values. It is easy enough to fix manually, so there is no rush for a fix.

Best regards,
T.J.

Hello Nick,

When you get a chance could you please increase the 1nm wavelength out put to 700nm? Currently your program gives up to 699nm. In order to run rtetracolor the values have to go up to 700nm. Thanks.

Best regards,
T.J.