National Center for Genome Resources's Projects
Amino-Acid k-mer Tool
fix alphabet and gene length problems in protein FASTA files
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
Interchange of biological sequences and metadata between Apache Arrow and FASTA files
Tools for Processing Biological Mapping Technologies
Fast big data XML parser and library, written in Ruby
Comparative genetic and genomic map viewer using Bokeh framework
A dynamic library and program for constructing and interacting with compressed de Bruijn graphs for pangenome analysis.
An implementatin of the CornBERT model
NCGR Coworking Studios
Pilot Project NNMC Cvar, Cbron, Cdes
Dask Worker Processing of Interpro, with Resource Control
Differential Expression Workshop
Generate an interactive dot plot from mummer or minimap alignments
Python programs for processing GFF3 files
HDF5 for JRuby
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Various Java apps written at NCGR for a variety of purposes.
LIS changes of schema and loader scripts from Chado
templates and htdocs for cmap.comparative-legumes.org
LIS search
LIS sequence search
http://comparative-legumes.org/
LIS species sites
Tools for Visualizing and Manipulating Mutation Annotation Data