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org.ncgr Java packages

Various Java apps written at NCGR for a variety of purposes, mostly to handle data for InterMine loaders. Each directory is an org.ncgr Java package.

National Center for Genome Resources's Projects

alphabetsoup icon alphabetsoup

fix alphabet and gene length problems in protein FASTA files

bali-phy icon bali-phy

Bayesian co-estimation of phylogenies and multiple alignments via MCMC

biofletch icon biofletch

Interchange of biological sequences and metadata between Apache Arrow and FASTA files

biomaptools icon biomaptools

Tools for Processing Biological Mapping Technologies

cdbg icon cdbg

A dynamic library and program for constructing and interacting with compressed de Bruijn graphs for pangenome analysis.

dotplotly icon dotplotly

Generate an interactive dot plot from mummer or minimap alignments

java icon java

Various Java apps written at NCGR for a variety of purposes.

lis_chado icon lis_chado

LIS changes of schema and loader scripts from Chado

lis_cmap icon lis_cmap

templates and htdocs for cmap.comparative-legumes.org

muttools icon muttools

Tools for Visualizing and Manipulating Mutation Annotation Data

nise icon nise

Summer Internship with NMSU

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