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ubongoAI's Projects

deepimpute icon deepimpute

An accurate and efficient deep learning method for single-cell RNA-seq data imputation

deeplearningclinicaldiagnostics icon deeplearningclinicaldiagnostics

Here I show how to utilize Bayesian Deep Learning using PyMC3 for making more accurate and safer predictions for biomedical applications

deepsmiles icon deepsmiles

DeepSMILES - A variant of SMILES for use in machine-learning

dgl icon dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

dgl-lifesci icon dgl-lifesci

Python package for graph neural networks in chemistry and biology

dlab-public icon dlab-public

Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"

dorothea icon dorothea

R package to access DoRothEA's regulons

dosing-rl-gym icon dosing-rl-gym

Patient data simulator following the structure of an open-ai gym.

dynbenchmark icon dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

exp2sl icon exp2sl

EXP2SL: a Machine Learning Framework for Cell-Line Specific Synthetic Lethality Prediction

explore-single-cell-resources-and-databases icon explore-single-cell-resources-and-databases

I have created a RShiny app to help community explore popular single cell based databases and resources. Please help add to this Shiny app and help community explore datasets from one webpage.

fancyimpute icon fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

fasmifra icon fasmifra

Molecular Generation by Fast Assembly of SMILES Fragments

fishreglab icon fishreglab

Model to predict effect of regulations on the population dynamics of fishes

foldseek icon foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

gain icon gain

Generative Adversarial Imputation Networks (GAIN)

gde icon gde

Graph Neural Ordinary Differential Equations

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