Giter Club home page Giter Club logo

amplicon16s's Introduction

๐Ÿฆ  Amplicon 16S

qiime2.sh

  • Preprocess
  • Quality control & filtering
  • Assign taxonomy
  • Diversity analysis
  • Phylogenetic tree

Create visualizations

R - qiimer2, phyloseq & metagenomeSeq

  • Sample composition plots
  • Alpha & Beta diversity
  • Differential abundance analysis (for zero inflated data)

Python - Microbiome gene set enrichment

  • Microbiome set enrichment analysis with MSEA
  • Pathways enrichment analysis with GSEApy

amplicon16s's People

Contributors

natmurad avatar

Stargazers

 avatar

Watchers

 avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.