Educational material for the N3C short course, January 2024. (All assignments are contained in the secure Enclave.)
- This GitHub public repo:
https://github.com/National-COVID-Cohort-Collaborative/short-course-2024-january - Syllabus
- N3C Resources
- The Researcher's Guide to N3C: https://covid.cd2h.org/guide-to-n3c
- N3C YouTube Channel: https://www.youtube.com/channel/UC-_3k5lsVb8g4yqSHAraC_Q
- OHDSI Resources:
- The Book of OHDSI: https://ohdsi.github.io/TheBookOfOhdsi
- OMOP table structure: https://ohdsi.github.io/CommonDataModel/cdm53.html
- Athena to view OMOP concepts: https://athena.ohdsi.org/search-terms/terms
- Atlas to view concept sets: https://atlas-demo.ohdsi.org/#/home
- Level 0 Workspace (that can be shared to anyone with an Enclave account)
- Level 2 Workspace (that is open only to students of this course)
| Session | Assignments | Recordings |
|---|---|---|
| 1. Introduction to N3C | post-work: due Jan 25 | Echo360 Recording |
| 2. Vocabularies, OHDSI Tools, and N3C | post-work: due Feb 1 | Echo360 Recording |
| 3. Analysis Using Synthetic Data | pre-work: due Feb 1 & post-work: due Feb 8 |
Echo360 Recording |
| 4. Building an Analytic Dataset Using Shared N3C Resources |
pre-work: due Feb 8 | Echo360 Recording |
| 5. Analyzing Data Curated from N3C: A Replication Study |
not available b/c L2 |
|
| 6. N3C Policies and Procedures: From Access to Publication |
Echo360 Recording |
- Google Drive in the ETDT:
https://drive.google.com/drive/folders/1UNMwP97YAHPuK_RFB1ufU48SK5gx6C6r - 2022 short course:
https://github.com/National-COVID-Cohort-Collaborative/short-course-2022-june
Installing package
remotes::install_github(
"National-COVID-Cohort-Collaborative/short-course-2024-january",
subdir = "workflow"
)
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