Comments (2)
Hi @creaturemoon,
The "is not a multi-read fast5 file"
message might be the incorrect warning here. We issue this warning assuming that the problem if the file cannot be loaded is that it's not a multi-read fast5 but it looks like HDF5/python is having issues loading the file.
'//path/to/sample/PAQ48458_pass_e7c8fe0a_d6ff6c63_3463.fast5',
file descriptor = 16,
errno = 5,
error message = 'Input/output error',
buf = 0x5620af79b1c0,
total read size = 512,
bytes this sub-read = 512,
bytes actually read = 18446744073709551615, <<< Erroneously large
offset = 0)"
This can be an issue with your file system or a corrupt file. HDF5 Forum Discussion
Kind regards,
Rich
from pod5-file-format.
Hi,
Thank you for the reply. I restarted the server and it can run normally now.
from pod5-file-format.
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