Comments (2)
Mathias-Boulanger
commented on July 20, 2024
I am very interested by this feature as well!
I already tried to create conda package recipes for pod5 and its dependencies using conda skeleton pypi pod5 or grayskull pypi pod5 (grayskull) but this is not a smooth build neither.
It will be very useful for the community to have at least all python-based Nanopore tools available in conda-forge or in bioconda. This will help the tools to be used and spread in standardised workflow manager framework (like nf-core)
Thank you for your help.
from pod5-file-format.
Related Issues (20)
- V0.3.6 pod5 view "Error while processing" HOT 3
- pod5 view does not work for some data since version 0.3.0 HOT 6
- pod5 webserver memory error HOT 2
- option to split pod5 by size/read number HOT 3
- Scratch/tmp pod5 problem HOT 21
- Semaphore hissy fit at the end of subset run HOT 1
- pod5 subset/filter in preparation for dorado duplex is slow HOT 5
- error with pod5 convert to_fast5 HOT 1
- Cannot install pod5 through pip on ARM due to dependency issues HOT 11
- Reader class attributes immutable (Cannot edit "sample_id" field of mutable read object) HOT 1
- getrandom error with pod5 convert fast5 HOT 14
- MantaControl': Unable to read fast5 file at /path/: HDF5 exception", HOT 2
- Getting the signal chunk size of a pod5 file HOT 1
- No documentation regarding multi-file pod5 dependency HOT 2
- pod5 convert fast5 warning: Failed to read key read_XXX HOT 2
- Troubleshooting Conversion of Fast5 Files to Pod5 Format HOT 12
- error：XX.fast5 is not a multi-read fast5 file HOT 2
- pod5 filter get killed HOT 5
- pod5 convert fast5 is stalling HOT 4
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