nalcala Goto Github PK
Name: Nicolas Alcala
Type: User
Company: IARC-WHO
Bio: Computational Biologist at the International Agency for Research on Cancer-WHO
Twitter: nl_alcala
Location: Lyon, France
Name: Nicolas Alcala
Type: User
Company: IARC-WHO
Bio: Computational Biologist at the International Agency for Research on Cancer-WHO
Twitter: nl_alcala
Location: Lyon, France
Tutorial for the sevenbridges cancer genomics cloud
Slides from lectures and presentations
Small data files to test IARC nextflow pipelines
Differential gene expression analysis based on the negative binomial distribution
Pipeline using facets for fraction and copy number estimate from tumor/normal sequencing
HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
Repository with latex scripts
Bayesian Inference method for patch occupancy data
Aggregate results from bioinformatics analyses across many samples into a single report.
Mutect pipeline with Nextflow
files to reproduce mutect2 issue
Nextflow pipeline to detect matched BAMs with NGSCheckMate
R scripts to explore diversity and differentiation statistics with respects to their mathematical bounds
R scripts to help project leadership
Repository with scripts for statistical analyses
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Data-Driven Documents codes.
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