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Python bindings for jq

License: BSD 2-Clause "Simplified" License

Python 61.78% Makefile 2.01% Cython 36.21%

jq.py's Introduction

jq.py: a lightweight and flexible JSON processor

This project contains Python bindings for jq 1.7.1.

Installation

Wheels are built for various Python versions and architectures on Linux and Mac OS X. On these platforms, you should be able to install jq with a normal pip install:

pip install jq

If a wheel is not available, the source for jq 1.7.1 is built. This requires:

Autoreconf
The normal C compiler toolchain, such as gcc and make.
libtool
Python headers.

Alternatively, set the environment variable JQPY_USE_SYSTEM_LIBS to 1 when installing the package to use the libjq and libonig versions available on the system rather than building them.

Debian, Ubuntu or relatives

If on Debian, Ubuntu or relatives, running the following command should be sufficient:

apt-get install autoconf automake build-essential libtool python-dev

Red Hat, Fedora, CentOS or relatives

If on Red Hat, Fedora, CentOS, or relatives, running the following command should be sufficient:

yum groupinstall "Development Tools"
yum install autoconf automake libtool python python-devel

Mac OS X

If on Mac OS X, you probably want to install Xcode and Homebrew. Once Homebrew is installed, you can install the remaining dependencies with:

brew install autoconf automake libtool

Usage

Using jq requires three steps:

Call jq.compile() to compile a jq program.
Call an input method on the compiled program to supply the input.
Call an output method on the result to retrieve the output.

For instance:

import jq

assert jq.compile(".+5").input_value(42).first() == 47

Input methods

Call .input_value() to supply a valid JSON value, such as the values returned from json.load:

import jq

assert jq.compile(".").input_value(None).first() == None
assert jq.compile(".").input_value(42).first() == 42
assert jq.compile(".").input_value(0.42).first() == 0.42
assert jq.compile(".").input_value(True).first() == True
assert jq.compile(".").input_value("hello").first() == "hello"

Call .input_values() to supply multiple valid JSON values, such as the values returned from json.load:

import jq

assert jq.compile(".+5").input_values([1, 2, 3]).all() == [6, 7, 8]

Call .input_text() to supply unparsed JSON text:

import jq

assert jq.compile(".").input_text("null").first() == None
assert jq.compile(".").input_text("42").first() == 42
assert jq.compile(".").input_text("0.42").first() == 0.42
assert jq.compile(".").input_text("true").first() == True
assert jq.compile(".").input_text('"hello"').first() == "hello"
assert jq.compile(".").input_text("1\n2\n3").all() == [1, 2, 3]

Pass slurp=True to .input_text() to read the entire input into an array:

import jq

assert jq.compile(".").input_text("1\n2\n3", slurp=True).first() == [1, 2, 3]

You can also call the older input() method by passing:

a valid JSON value, such as the values returned from json.load, as a positional argument
unparsed JSON text as the keyword argument text

For instance:

import jq

assert jq.compile(".").input("hello").first() == "hello"
assert jq.compile(".").input(text='"hello"').first() == "hello"

Output methods

Calling first() on the result will run the program with the given input, and return the first output element.

import jq

assert jq.compile(".").input_value("hello").first() == "hello"
assert jq.compile("[.[]+1]").input_value([1, 2, 3]).first() == [2, 3, 4]
assert jq.compile(".[]+1").input_value([1, 2, 3]).first() == 2

Call text() instead of first() to serialise the output into JSON text:

assert jq.compile(".").input_value("42").text() == '"42"'

When calling text(), if there are multiple output elements, each element is represented by a separate line:

assert jq.compile(".[]").input_value([1, 2, 3]).text() == "1\n2\n3"

Call all() to get all of the output elements in a list:

assert jq.compile(".[]+1").input_value([1, 2, 3]).all() == [2, 3, 4]

Call iter() to get all of the output elements as an iterator:

iterator = iter(jq.compile(".[]+1").input_value([1, 2, 3]))
assert next(iterator, None) == 2
assert next(iterator, None) == 3
assert next(iterator, None) == 4
assert next(iterator, None) == None

Arguments

Calling compile() with the args argument allows predefined variables to be used within the program:

program = jq.compile("$a + $b + .", args={"a": 100, "b": 20})
assert program.input_value(3).first() == 123

Convenience functions

Convenience functions are available to get the output for a program and input in one call:

assert jq.first(".[] + 1", [1, 2, 3]) == 2
assert jq.first(".[] + 1", text="[1, 2, 3]") == 2
assert jq.text(".[] + 1", [1, 2, 3]) == "2\n3\n4"
assert jq.all(".[] + 1", [1, 2, 3]) == [2, 3, 4]
assert list(jq.iter(".[] + 1", [1, 2, 3])) == [2, 3, 4]

Original program string

The original program string is available on a compiled program as the program_string attribute:

program = jq.compile(".")
assert program.program_string == "."

jq.py's People

Contributors

Stargazers

Watchers

jq.py's Issues

Unable to build from source using pip

Hi @mwilliamson, I make extensive use of jq.py on a bunch of projects and currently have the need to deploy it on Linux/ppc64le architecture systems

I noticed that you seem to produce your wheel and publish it via a makefile (this is exactly how I do my wheels as well, with a Makefile wrapping versioneer, setup.py and twine, so I definitely understand that is your preferred way to produce wheels for supported platforms.

I took a little time today to modify setup.py so that it will continue to work as it always has, but also supports building at installation time so that on systems without a binary wheel available, you can still use something like ...

pip install -e git+https://github.com/mzpqnxow/jq.py@setuptools-build#egg=jq

... to install the dynamically buildable version. With this, I can actually use pip to pull down my setuptools-build branch, which is a fork of your master. It builds and installs cleanly on my ppc64le box, and is implemented in such a way that it doesn't impact the existing behavior for, e.g. x86_64

Note, I also updated your makefile to a newer version of Cython because using your build system on x86_64 (make) was failing. After updating the Cython version that it installs in the virtualenv, using make now works again.

However, the following does not work on x86_64:
pip install --no-binary :all: -e 'git+https://github.com/mzpqnxow/jq.py@setuptools-build#egg=jq'

To be fair though, it never did :)

I'm going to send in a PR, please consider if you would like to accept it or if you would prefer I maintain my own fork.

Also, I'm happy to contribute a ppc64le binary wheel for you to publih to PyPi to save other users the trouble (though there probably aren't many out there ...)

EDIT: The PR I sent did end up working fine on x86_64 and ppc64le when building via pip install

fails with python 3.8

On a clean venv, running the first example from the documentation fails:

$ python -m venv jq
$ jq/bin/pip install jq
Collecting jq
  Using cached https://files.pythonhosted.org/packages/82/0c/bf3f544f850cef19f4468bea93e4d0aa908e0d8c601609ba1ed561b42c79/jq-0.1.6.tar.gz
Installing collected packages: jq
  Running setup.py install for jq ... done
Successfully installed jq-0.1.6
WARNING: You are using pip version 19.2.3, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
$ jq/bin/python
Python 3.8.0 (default, Oct 23 2019, 18:51:26) 
[GCC 9.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from jq import jq
>>> jq(".").transform("42") == "42"
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "jq.pyx", line 131, in jq._Program.transform (jq.c:1925)
TypeError: 'cython_function_or_method' object does not support vectorcall
>>>

tests not packaged into release tarballs

The tests/ subdirectory is not packaged into the tarball uploaded to PyPI, so trying to run self-tests there fails:

$ tar -tvf /usr/ports/distfiles/jq-1.2.1.tar.gz 
drwxr-xr-x  0 runner docker      0  2 Aug. 20:42 jq-1.2.1/
-rw-r--r--  0 runner docker   1307  2 Aug. 20:42 jq-1.2.1/LICENSE
-rw-r--r--  0 runner docker     35  2 Aug. 20:42 jq-1.2.1/MANIFEST.in
-rw-r--r--  0 runner docker   4545  2 Aug. 20:42 jq-1.2.1/PKG-INFO
-rw-r--r--  0 runner docker   3787  2 Aug. 20:42 jq-1.2.1/README.rst
-rw-r--r--  0 runner docker 505577  2 Aug. 20:42 jq-1.2.1/jq.c
drwxr-xr-x  0 runner docker      0  2 Aug. 20:42 jq-1.2.1/jq.egg-info/
-rw-r--r--  0 runner docker   4545  2 Aug. 20:42 jq-1.2.1/jq.egg-info/PKG-INFO
-rw-r--r--  0 runner docker    163  2 Aug. 20:42 jq-1.2.1/jq.egg-info/SOURCES.txt
-rw-r--r--  0 runner docker      1  2 Aug. 20:42 jq-1.2.1/jq.egg-info/dependency_links.txt
-rw-r--r--  0 runner docker      3  2 Aug. 20:42 jq-1.2.1/jq.egg-info/top_level.txt
-rw-r--r--  0 runner docker    135  2 Aug. 20:42 jq-1.2.1/pyproject.toml
-rw-r--r--  0 runner docker     38  2 Aug. 20:42 jq-1.2.1/setup.cfg
-rw-r--r--  0 runner docker   4657  2 Aug. 20:42 jq-1.2.1/setup.py

jq install fails from pypi mirror without internet access

Instead of downloading the jq tarball at install time, it seems like it would be better to download the jq tarball as part of setup only if the file doesn't exist, and include it as part of the uploaded tarball to pypi. This has the positive side effect of ensuring that issues such as #11 cannot happen in the future, regardless of what the jq project does with its source code.

For example, I do something similar in this project: https://github.com/robotpy/robotpy-wpilib/blob/master/hal-roborio/setup.py

Unable to specify JSON encoder

results = jq('.[].audits[].events[] | select(.field_name=="satisfaction_score" and .previous_value=="offered").value').transform(data, multiple_output=True, text_output=False)

Results in:

File "/Users/jamie/Dropbox/work.SignalFX/data.PycharmProjects/python.CustomerSauce/zenstats.py", line 493, in report_csr results = jq('.[].audits[].events[] | select(.field_name=="satisfaction_score" and .previous_value=="offered").value').transform(data, multiple_output=True, text_output=False) File "jq.pyx", line 115, in jq._Program.transform (jq.c:1690) File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/__init__.py", line 243, in dumps return _default_encoder.encode(obj) File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/encoder.py", line 207, in encode chunks = self.iterencode(o, _one_shot=True) File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/encoder.py", line 270, in iterencode return _iterencode(o, 0) File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/encoder.py", line 184, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: datetime.datetime(2016, 10, 17, 7, 6, 13, tzinfo=<DstTzInfo 'US/Pacific' PDT-1 day, 17:00:00 DST>) is not JSON serializable

Are there plans to support jq structs instead of dumping Python structures to string then having jq reassemble them into C-structs?

Cannot install from PyPI

hi,

installing of jq from pipy repo is currently broken. This is happening since Friday late or Saturday.

Add wheel distributions

Would it be possible to add wheel distributions to support partially offline installations (i.e with access to pypi, but not github)?

accessing the jsonpath string from within the compiled jq object

I was wondering if its possible to add a variable to access the jsonpath string.

The most common example I see is

from jq import jq

jq(".").transform("42")

However, in some of my programs, I perform the transform operation many times. In that case, I usually do

from jq import jq

j = jq(".")

j.transform("42")
j.transform("6")

The problem is, when something fails, I'd like to access the jsonpath string (in this case ".") and log it.

Add support to release aarch64 wheels

Problem

On aarch64, ‘pip install jq’ builds the wheels from source code and then installs it. It requires the user to have a development environment installed on his system. Also, it takes some time to build the wheels than downloading and extracting the wheels from pypi.

Resolution

On aarch64, ‘pip install jq’ should download the wheels from pypi

@mwilliamson Please let me know your interest in releasing aarch64 wheels. I can help with this.

jq is compiled without ONIGURUMA regex libary

>>> jq('.["one"] | test( ".*") ').transform({"one": 1})
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "jq.pyx", line 123, in jq._Program.transform (jq.c:1766)
ValueError: jq was compiled without ONIGURUMA regex libary. match/test/sub and related functions are not available.
>>>

`pip install` fails on recent Ubuntu

Please help.

:;  aptitude install -y flex gcc yacc
:;  pip install jq
...
  YACC   parser.c

Usage: byacc [options] filename
...
make: *** [parser.c] Error 1
Cleaning up...
Command /usr/bin/python -c "import setuptools;__file__='/tmp/pip_build_root/jq/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-uLvLZ8-record/install-record.txt --single-version-externally-managed failed with error code 1 in /tmp/pip_build_root/jq
Storing complete log in /home/ubuntu/.pip/pip.log

unable to install on mac via pip

uname Darwin 88e9fe73e507 18.2.0 Darwin Kernel Version 18.2.0: Mon Nov 12 20:24:46 PST 2018; root:xnu-4903.231.4~2/RELEASE_X86_64 x86_64

`pip install jq  
Collecting jq
Using cached https://files.pythonhosted.org/packages/82/0c/bf3f544f850cef19f4468bea93e4d0aa908e0d8c601609ba1ed561b42c79/jq-0.1.6.tar.gz
Building wheels for collected packages: jq
Running setup.py bdist_wheel for jq ... error
Complete output from command /usr/local/opt/python@2/bin/python2.7 -u -c "import setuptools, tokenize;file='/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" bdist_wheel -d /private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-wheel-rHZOrb --python-tag cp27:
running bdist_wheel
running build
running build_ext
Traceback (most recent call last):
File "", line 1, in
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 123, in
'Programming Language :: Python :: 3.5',
File "/usr/local/lib/python2.7/site-packages/setuptools/init.py", line 143, in setup
return distutils.core.setup(**attrs)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/lib/python2.7/site-packages/wheel/bdist_wheel.py", line 188, in run
self.run_command('build')
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build.py", line 127, in run
self.run_command(cmd_name)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 40, in run
self._build_oniguruma()
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 52, in _build_oniguruma
["make", "install"],
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 68, in _build_lib
self._download_tarball(source_url, tarball_path)
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 88, in _download_tarball
tarfile.open(tarball_path, "r:gz").extractall(path_in_dir("."))
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/tarfile.py", line 1693, in open
return func(name, filemode, fileobj, **kwargs)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/tarfile.py", line 1751, in gzopen
raise ReadError("not a gzip file")
tarfile.ReadError: not a gzip file

Failed building wheel for jq
Running setup.py clean for jq
Failed to build jq
Installing collected packages: jq
Running setup.py install for jq ... error
Complete output from command /usr/local/opt/python@2/bin/python2.7 -u -c "import setuptools, tokenize;file='/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-record-pegN44/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_ext
Traceback (most recent call last):
File "", line 1, in
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 123, in
'Programming Language :: Python :: 3.5',
File "/usr/local/lib/python2.7/site-packages/setuptools/init.py", line 143, in setup
return distutils.core.setup(**attrs)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/lib/python2.7/site-packages/setuptools/command/install.py", line 61, in run
return orig.install.run(self)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/install.py", line 563, in run
self.run_command('build')
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build.py", line 127, in run
self.run_command(cmd_name)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 40, in run
self._build_oniguruma()
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 52, in _build_oniguruma
["make", "install"],
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 68, in _build_lib
self._download_tarball(source_url, tarball_path)
File "/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py", line 88, in _download_tarball
tarfile.open(tarball_path, "r:gz").extractall(path_in_dir("."))
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/tarfile.py", line 1693, in open
return func(name, filemode, fileobj, **kwargs)
File "/usr/local/Cellar/python@2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/tarfile.py", line 1751, in gzopen
raise ReadError("not a gzip file")
tarfile.ReadError: not a gzip file

----------------------------------------

Command "/usr/local/opt/python@2/bin/python2.7 -u -c "import setuptools, tokenize;file='/private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-record-pegN44/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/4y/ld4t0qxn3tn9t1h_y4_rkg340000gp/T/pip-install-KcSdd0/jq/`

Getting pretty-printed JSON out of jq

Hi,

I needed, in the context of a Python program, to canonicalize and pretty-print some JSON, and thought I would try using jq.py (since jq on its own supports these features, ie jq -S ".". I couldn't seem to make this happen with jq.py so ended up resorting to using subprocess to call jq directly. Did I miss something in the docs, or is my use case not supported?

Thanks!

Regex in compile doesn't escape "."

I am trying to do a regex to search for ips and a ValueError/compile error is thrown when executing the below code:

`
import jq

re1 = '127\\.'

match = "127.0.0.1"

query = jq.compile(re1).input(match).all()

print(query)
`

Traceback
Traceback (most recent call last): File "/Users/project/path/components/troubleshooting/test.py", line 7, in <module> query = jq.compile(re1).input(match).all() File "jq.pyx", line 56, in jq.compile File "jq.pyx", line 160, in jq._Program.__cinit__ File "jq.pyx", line 131, in jq._JqStatePool.__cinit__ File "jq.pyx", line 84, in jq._compile File "jq.pyx", line 72, in jq._compile File "jq.pyx", line 78, in jq._compile ValueError: jq: error: syntax error, unexpected INVALID_CHARACTER, expecting $end (Unix shell quoting issues?) at <top-level>, line 1: 127\. jq: 1 compile error

`pip install jq` error on Mac OS X

I got the following problem when I try to install it. Does anybody know what is the problem? Thanks.

$ pip install jq
Collecting jq
  Using cached https://files.pythonhosted.org/packages/82/0c/bf3f544f850cef19f4468bea93e4d0aa908e0d8c601609ba1ed561b42c79/jq-0.1.6.tar.gz
Installing collected packages: jq
  Running setup.py install for jq ... error
    ERROR: Command errored out with exit status 1:
     command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/mktemp/pip-install-5qs9hrws/jq/setup.py'"'"'; __file__='"'"'/private/tmp/mktemp/pip-install-5qs9hrws/jq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/tmp/mktemp/pip-record-shu7iede/install-record.txt --single-version-externally-managed --compile
         cwd: /private/tmp/mktemp/pip-install-5qs9hrws/jq/
    Complete output (4 lines):
    running install
    running build
    running build_ext
    error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1055)>
    ----------------------------------------
ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/tmp/mktemp/pip-install-5qs9hrws/jq/setup.py'"'"'; __file__='"'"'/private/tmp/mktemp/pip-install-5qs9hrws/jq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/tmp/mktemp/pip-record-shu7iede/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

Recent performance changes

I have a use case that involves calling jq about a hundred times over. Measuring versus 0.1.9a1 (the last version where I can verify performance is similar to previous versions), 1.0.0a4 added about an order of magnitude of time to my benchmark, and 1.0.0.a5 added another order of magnitude.

Does this have a workaround or something that should be changed on my side? For now, I'll pin to 0.1.8 until I have time to investigate further.

Doesn't build on OS X because bison is too old

$ pip install jq
...
    checking bison version... no
    configure: error: You need bison version 2.5 or more recent.
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/Users/marca/dev/git-repos/jq.py/setup.py", line 77, in <module>
        'Programming Language :: Python :: 3.4',
      File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 152, in setup
        dist.run_commands()
      File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/Users/marca/python/virtualenvs/jq.py/lib/python2.7/site-packages/setuptools/command/develop.py", line 32, in run
        self.install_for_development()
      File "/Users/marca/python/virtualenvs/jq.py/lib/python2.7/site-packages/setuptools/command/develop.py", line 117, in install_for_development
        self.run_command('build_ext')
      File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/Users/marca/dev/git-repos/jq.py/setup.py", line 41, in run
        command(["./configure", "CFLAGS=-fPIC"])
      File "/Users/marca/dev/git-repos/jq.py/setup.py", line 38, in command
        subprocess.check_call(args, cwd=jq_lib_dir)
      File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 540, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['./configure', 'CFLAGS=-fPIC']' returned non-zero exit status 1
    Complete output from command /Users/marca/python/virtualenvs/jq.py/bin/python -c "import setuptools, tokenize; __file__='/Users/marca/dev/git-repos/jq.py/setup.py'; exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" develop --no-deps:

I'm trying to figure out if I can coax it into building...

OS X install fails: ./libtool: eval: line 1720: syntax error near unexpected token `|'

I'm installing JQ using "pip3 install jq" on macOS (Mojave 10.14.6). I installed the latest version of XCODE, ran a full "brew upgrade" and "brew install autoconf automake libtool". Every time installation fails with the exact same issue (see output snippet below).

Any help on what might be causing this is very appreciated.

   checking for tan... yes
    checking for tanh... yes
    checking for tgamma... yes
    checking for y0... yes
    checking for y1... yes
    checking for pow... yes
    checking for atan2... yes
    checking for hypot... yes
    checking for remainder... yes
    checking for thread-local storage... no
    checking whether byte ordering is bigendian... no
    checking that generated files are newer than configure... done
    configure: creating ./config.status
    config.status: creating Makefile
    config.status: executing depfiles commands
    config.status: executing libtool commands
    Executing: make
    /Applications/Xcode.app/Contents/Developer/usr/bin/make  all-am
      GEN      version.h
      CC       main.o
      CC       locfile.lo
      CC       bytecode.lo
      CC       compile.lo
      CC       execute.lo
      CC       builtin.lo
      CC       jv.lo
      CC       jv_parse.lo
      CC       jv_print.lo
      CC       jv_dtoa.lo
      CC       jv_unicode.lo
      CC       jv_aux.lo
      CC       jv_file.lo
      CC       jv_alloc.lo
      CC       jq_test.lo
      CC       util.lo
      CC       linker.lo
      CC       parser.lo
      CC       lexer.lo
      CCLD     libjq.la
    ./libtool: eval: line 1720: syntax error near unexpected token `|'
    ./libtool: eval: line 1720: `/usr/bin/nm -B  .libs/locfile.o .libs/bytecode.o .libs/compile.o .libs/execute.o .libs/builtin.o .libs/jv.o .libs/jv_parse.o .libs/jv_print.o .libs/jv_dtoa.o .libs/jv_unicode.o .libs/jv_aux.o .libs/jv_file.o .libs/jv_alloc.o .libs/jq_test.o .libs/util.o .libs/linker.o .libs/parser.o .libs/lexer.o   |  | /usr/bin/sed 's/.* //' | sort | uniq > .libs/libjq.exp'
    make[1]: *** [libjq.la] Error 1
    make: *** [all] Error 2
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/setup.py", line 123, in <module>
        'Programming Language :: Python :: 3.5',
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/__init__.py", line 145, in setup
        return distutils.core.setup(**attrs)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/core.py", line 148, in setup
        dist.run_commands()
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/dist.py", line 955, in run_commands
        self.run_command(cmd)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/setuptools/command/install.py", line 61, in run
        return orig.install.run(self)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/command/install.py", line 545, in run
        self.run_command('build')
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/command/build.py", line 135, in run
        self.run_command(cmd_name)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/setup.py", line 41, in run
        self._build_libjq()
      File "/private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/setup.py", line 64, in _build_libjq
        ["make"],
      File "/private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/setup.py", line 79, in _build_lib
        run_command(command)
      File "/private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/setup.py", line 76, in run_command
        subprocess.check_call(args, cwd=lib_dir)
      File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/subprocess.py", line 291, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['make']' returned non-zero exit status 2.
    
    ----------------------------------------
Command "/Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-record-qju8leis/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/_m/9k2by9n51ydb8t7wj33h82sh0000gn/T/pip-req-build-p127ofik/

Select support

The Bash version of jq has a select option, which is accessed via a pipe. Is there a way to do something similar with jq.py, for example:

jq.compile(f'.[] | select({expression} == {value})').input(my_json_data).text()

[feature request]: args on input rather than compile?

To run one jq program having a $ variable with many values, I currently do:

[jq.compile('.id = $x', args={'x': x}).input({'id': None}).first() for x in range(10)]

Could it be faster if your API allowed the args parameter on input? As in:

program = jq.compile('.id = $x')
[program.input({'id': None}, args={'x': x}).first() for x in range(10)]

Any reason not to yield each output value?

Instead of collecting them into an array.

Conveting back to dict or list

Hello,

I cannot figure out how to convert the resulting output of jq.compile() back to a dict or list (whichever it started as). Essentially I want to use jq to modify/assign parts of a dict or list. I am able to run the assignment commands fine, just not sure how to transform the output.

For example I want to do something like:

input = {
  "numbers": []
}
input = jq.compile('.numbers += [1234]').input(self.data.json_data)
print(input)
# { "numbers": [ 1234 ] }

I have tried these to no avail as well:

input = vars(jq.compile('.numbers += [1234]').input(self.data.json_data))
input = dict(jq.compile('.numbers += [1234]').input(self.data.json_data))

Thanks!

Failure to build with "gcc: error: jq.c: No such file or directory"

I apologize in advance if the answer is obvious ... I'm new to building C extensions. I'm attempting to build from your 1.2.1 tag. The jq dependency appears to build with no problem (if I drop in to _deps/jq-1.6 and make install I get a working executable).

Here is the end of the output from pip install .

building 'jq' extension
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/workspaces/jq.py/_deps/jq-1.6/src -I/usr/local/include/python3.10 -c jq.c -o build/temp.linux-x86_64-3.10/jq.o
  gcc: error: jq.c: No such file or directory
  gcc: fatal error: no input files
  compilation terminated.
  error: command '/usr/bin/gcc' failed with exit code 1
  ----------------------------------------
  ERROR: Failed building wheel for jq
Failed to build jq
ERROR: Could not build wheels for jq, which is required to install pyproject.toml-based projects

If I look in _deps/jq-1.6/src/ there is indeed no "jq.c".

1.2.1 self-test assertion failure on FreeBSD 13.0 with Python 3.8

======================================================= test session starts ========================================================
platform freebsd13 -- Python 3.8.11, pytest-4.6.11, py-1.9.0, pluggy-0.13.1
cachedir: .tox/py38/.pytest_cache
rootdir: /usr/ports/textproc/py-jq/work-py38/jq-1.2.1, inifile: tox.ini
plugins: requests-mock-1.9.3
collected 52 items                                                                                                                 

../../../tests/jq_old_tests.py ...............                                                                               [ 28%]
../../../tests/jq_tests.py ..................F..................                                                             [100%]

============================================================= FAILURES =============================================================
_____________________________________ test_returned_integers_larger_than_32_bits_have_int_type _____________________________________

    def test_returned_integers_larger_than_32_bits_have_int_type():
        program = jq.compile("pow(.; 33)")
    
        result = program.input(2).first()
    
        assert_equal(2 ** 33, result)
>       assert_equal(int, type(result))

../../../tests/jq_tests.py:174: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

expected = <class 'int'>, actual = <class 'float'>

    def assert_equal(expected, actual):
>       assert expected == actual
E       AssertionError: assert <class 'int'> == <class 'float'>

../../../tests/tools.py:2: AssertionError
=============================================== 1 failed, 51 passed in 1.75 seconds ================================================
ERROR: InvocationError for command /usr/local/bin/py.test /usr/ports/textproc/py-jq/work-py38/jq-1.2.1/tests (exited with code 1)
_____________________________________________________________ summary ______________________________________________________________
ERROR:   py38: commands failed

How does this compare to pyjq - https://github.com/doloopwhile/pyjq ?

Why one or the other? Both seem maintained.
Thanks

pip install fails mac os mojave with SSL error

Hi,

Tried to installed jq via pip on Mac OS Majove (10.14.4) and I'm getting an SSL error. Can we get a fix for this? All of my autorconf and libtool libraries are up to date. Thanks.

error: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: self signed certificate in certificate chain (_ssl.c:1056)>

Upgrade to 1.5?

create wheels?

@mwilliamson would it be possible to create wheels for the latest macos/python? this way we won't need to do brew install autoconf automake libtool to use the package

Question: possible to create non-programmatic transformations?

Great to see this binding. Thanks for making it!

I was wondering, how hard do you think it would be to define the transformation pipeline via a small grammar instead of programmatically?

For example, define the transformation in a json/yaml doc and have the pipeline created from that (vs. hand-crafted python code).

I'd like to make our transformations data-driven.

Unicode content is being broken

As you can see from the following code (Python 3.8.6), jq breaks Unicode:

>>> import jq
>>> import json
>>> jsondata = json.loads('[{"title": "TPS™ Analyst", "company": "Any"}]')
>>> jqdata = jq.text('.[].title', jsondata)
>>> jqdata == jsondata[0]['title']
False

Indeed:

>>> print(jsondata[0]['title'], ',', jqdata)
TPS™ Analyst , "TPS\u2122 Analyst"

jq turned ™ into the string \u2122!

Nothing in the docs about this.

ERROR: Could not build wheels for jq which use PEP 517 and cannot be installed directly

When testing Python 3.10.0-beta.4 (GitHub Actions) with pip 21.2.2, could not install jq due to ERROR: Could not build wheels for jq which use PEP 517 and cannot be installed directly

2021-07-31T14:49:29.6237605Z Found online and idle hosted runner(s) in the current repository's organization account that matches the required labels: 'ubuntu-latest'
2021-07-31T14:49:29.6237677Z Waiting for a hosted runner in 'organization' to pick this job...
2021-07-31T14:49:36.6752258Z Current runner version: '2.279.0'
2021-07-31T14:49:36.6780908Z ##[group]Operating System
2021-07-31T14:49:36.6781888Z Ubuntu
2021-07-31T14:49:36.6782397Z 20.04.2
2021-07-31T14:49:36.6782809Z LTS
2021-07-31T14:49:36.6783307Z ##[endgroup]
2021-07-31T14:49:36.6783903Z ##[group]Virtual Environment
2021-07-31T14:49:36.6784727Z Environment: ubuntu-20.04
2021-07-31T14:49:36.6785739Z Version: 20210726.1
2021-07-31T14:49:36.6786862Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210726.1/images/linux/Ubuntu2004-README.md
2021-07-31T14:49:36.6788668Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210726.1
2021-07-31T14:49:36.6791562Z ##[endgroup]
2021-07-31T14:49:36.6794501Z ##[group]GITHUB_TOKEN Permissions
2021-07-31T14:49:36.6796799Z Actions: write
2021-07-31T14:49:36.6797589Z Checks: write
2021-07-31T14:49:36.6798142Z Contents: write
2021-07-31T14:49:36.6798890Z Deployments: write
2021-07-31T14:49:36.6799630Z Discussions: write
2021-07-31T14:49:36.6800235Z Issues: write
2021-07-31T14:49:36.6800717Z Metadata: read
2021-07-31T14:49:36.6801295Z Packages: write
2021-07-31T14:49:36.6801905Z PullRequests: write
2021-07-31T14:49:36.6802512Z RepositoryProjects: write
2021-07-31T14:49:36.6803196Z SecurityEvents: write
2021-07-31T14:49:36.6803727Z Statuses: write
2021-07-31T14:49:36.6804648Z ##[endgroup]
[...]
2021-07-31T14:50:47.6675158Z   Building wheel for jq (PEP 517): started
2021-07-31T14:51:23.3817181Z   Building wheel for jq (PEP 517): finished with status 'error'
2021-07-31T14:51:23.3827586Z   ERROR: Command errored out with exit status 1:
2021-07-31T14:51:23.3829972Z    command: /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/bin/python /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpee3sh3at
2021-07-31T14:51:23.3832147Z        cwd: /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7
2021-07-31T14:51:23.3832981Z   Complete output (1437 lines):
2021-07-31T14:51:23.3833489Z   running bdist_wheel
2021-07-31T14:51:23.3833922Z   running build
2021-07-31T14:51:23.3834361Z   running build_ext
2021-07-31T14:51:23.3835201Z   checking for a BSD-compatible install... /usr/bin/install -c
2021-07-31T14:51:23.3835996Z   checking whether build environment is sane... yes
2021-07-31T14:51:23.3837000Z   checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
2021-07-31T14:51:23.3837603Z   checking for gawk... gawk
2021-07-31T14:51:23.3838162Z   checking whether make sets $(MAKE)... yes
2021-07-31T14:51:23.3838877Z   checking whether make supports nested variables... yes
2021-07-31T14:51:23.3839496Z   checking for gcc... gcc
2021-07-31T14:51:23.3840080Z   checking whether the C compiler works... yes
2021-07-31T14:51:23.3840803Z   checking for C compiler default output file name... a.out
2021-07-31T14:51:23.3841494Z   checking for suffix of executables...
2021-07-31T14:51:23.3842178Z   checking whether we are cross compiling... no
2021-07-31T14:51:23.3843190Z   checking for suffix of object files... o
2021-07-31T14:51:23.3843882Z   checking whether we are using the GNU C compiler... yes
2021-07-31T14:51:23.3844797Z   checking whether gcc accepts -g... yes
2021-07-31T14:51:23.3845468Z   checking for gcc option to accept ISO C89... none needed
2021-07-31T14:51:23.3846430Z   checking whether gcc understands -c and -o together... yes
2021-07-31T14:51:23.3847177Z   checking for style of include used by make... GNU
2021-07-31T14:51:23.3847823Z   checking dependency style of gcc... gcc3
2021-07-31T14:51:23.3848688Z   checking build system type... x86_64-pc-linux-gnu
2021-07-31T14:51:23.3849577Z   checking host system type... x86_64-pc-linux-gnu
2021-07-31T14:51:23.3850225Z   checking how to print strings... printf
2021-07-31T14:51:23.3850933Z   checking for a sed that does not truncate output... /usr/bin/sed
2021-07-31T14:51:23.3851893Z   checking for grep that handles long lines and -e... /usr/bin/grep
2021-07-31T14:51:23.3852764Z   checking for egrep... /usr/bin/grep -E
2021-07-31T14:51:23.3853542Z   checking for fgrep... /usr/bin/grep -F
2021-07-31T14:51:23.3854129Z   checking for ld used by gcc... /usr/bin/ld
2021-07-31T14:51:23.3854940Z   checking if the linker (/usr/bin/ld) is GNU ld... yes
2021-07-31T14:51:23.3856239Z   checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
2021-07-31T14:51:23.3857227Z   checking the name lister (/usr/bin/nm -B) interface... BSD nm
2021-07-31T14:51:23.3858076Z   checking whether ln -s works... yes
2021-07-31T14:51:23.3858781Z   checking the maximum length of command line arguments... 3145728
2021-07-31T14:51:23.3859989Z   checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
2021-07-31T14:51:23.3861337Z   checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
2021-07-31T14:51:23.3862436Z   checking for /usr/bin/ld option to reload object files... -r
2021-07-31T14:51:23.3863095Z   checking for objdump... objdump
2021-07-31T14:51:23.3863802Z   checking how to recognize dependent libraries... pass_all
2021-07-31T14:51:23.3864460Z   checking for dlltool... no
2021-07-31T14:51:23.3865162Z   checking how to associate runtime and link libraries... printf %s\n
2021-07-31T14:51:23.3865992Z   checking for ar... ar
2021-07-31T14:51:23.3866560Z   checking for archiver @FILE support... @
2021-07-31T14:51:23.3867152Z   checking for strip... strip
2021-07-31T14:51:23.3867693Z   checking for ranlib... ranlib
2021-07-31T14:51:23.3868602Z   checking command to parse /usr/bin/nm -B output from gcc object... ok
2021-07-31T14:51:23.3869273Z   checking for sysroot... no
2021-07-31T14:51:23.3869807Z   checking for a working dd... /usr/bin/dd
2021-07-31T14:51:23.3870493Z   checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
2021-07-31T14:51:23.3871107Z   checking for mt... mt
2021-07-31T14:51:23.3871617Z   checking if mt is a manifest tool... no
2021-07-31T14:51:23.3872467Z   checking how to run the C preprocessor... gcc -E
2021-07-31T14:51:23.3873153Z   checking for ANSI C header files... yes
2021-07-31T14:51:23.3873726Z   checking for sys/types.h... yes
2021-07-31T14:51:23.3874274Z   checking for sys/stat.h... yes
2021-07-31T14:51:23.3874798Z   checking for stdlib.h... yes
2021-07-31T14:51:23.3875339Z   checking for string.h... yes
2021-07-31T14:51:23.3875879Z   checking for memory.h... yes
2021-07-31T14:51:23.3876408Z   checking for strings.h... yes
2021-07-31T14:51:23.3876974Z   checking for inttypes.h... yes
2021-07-31T14:51:23.3877534Z   checking for stdint.h... yes
2021-07-31T14:51:23.3878054Z   checking for unistd.h... yes
2021-07-31T14:51:23.3878580Z   checking for dlfcn.h... yes
2021-07-31T14:51:23.3879089Z   checking for objdir... .libs
2021-07-31T14:51:23.3879981Z   checking if gcc supports -fno-rtti -fno-exceptions... no
2021-07-31T14:51:23.3880954Z   checking for gcc option to produce PIC... -fPIC -DPIC
2021-07-31T14:51:23.3881814Z   checking if gcc PIC flag -fPIC -DPIC works... yes
2021-07-31T14:51:23.3882805Z   checking if gcc static flag -static works... yes
2021-07-31T14:51:23.3883632Z   checking if gcc supports -c -o file.o... yes
2021-07-31T14:51:23.3884469Z   checking if gcc supports -c -o file.o... (cached) yes
2021-07-31T14:51:23.3885551Z   checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
2021-07-31T14:51:23.3886604Z   checking whether -lc should be explicitly linked in... no
2021-07-31T14:51:23.3887436Z   checking dynamic linker characteristics... GNU/Linux ld.so
2021-07-31T14:51:23.3888297Z   checking how to hardcode library paths into programs... immediate
2021-07-31T14:51:23.3889119Z   checking whether stripping libraries is possible... yes
2021-07-31T14:51:23.3890336Z   checking if libtool supports shared libraries... yes
2021-07-31T14:51:23.3891121Z   checking whether to build shared libraries... yes
2021-07-31T14:51:23.3891837Z   checking whether to build static libraries... yes
2021-07-31T14:51:23.3892543Z   checking whether make sets $(MAKE)... (cached) yes
2021-07-31T14:51:23.3893208Z   checking sys/time.h usability... yes
2021-07-31T14:51:23.3893815Z   checking sys/time.h presence... yes
2021-07-31T14:51:23.3894395Z   checking for sys/time.h... yes
2021-07-31T14:51:23.3894955Z   checking for unistd.h... (cached) yes
2021-07-31T14:51:23.3895772Z   checking sys/times.h usability... yes
2021-07-31T14:51:23.3896413Z   checking sys/times.h presence... yes
2021-07-31T14:51:23.3896989Z   checking for sys/times.h... yes
2021-07-31T14:51:23.3897515Z   checking size of int... 4
2021-07-31T14:51:23.3898017Z   checking size of long... 8
2021-07-31T14:51:23.3898502Z   checking for size_t... yes
2021-07-31T14:51:23.3899051Z   checking for working alloca.h... yes
2021-07-31T14:51:23.3899593Z   checking for alloca... yes
2021-07-31T14:51:23.3900275Z   checking that generated files are newer than configure... done
2021-07-31T14:51:23.3901018Z   configure: creating ./config.status
2021-07-31T14:51:23.3901637Z   config.status: creating Makefile
2021-07-31T14:51:23.3902278Z   config.status: creating src/Makefile
2021-07-31T14:51:23.3902925Z   config.status: creating test/Makefile
2021-07-31T14:51:23.3903581Z   config.status: creating sample/Makefile
2021-07-31T14:51:23.3905588Z   config.status: creating onig-config
2021-07-31T14:51:23.3906439Z   config.status: creating src/config.h
2021-07-31T14:51:23.3907296Z   config.status: executing depfiles commands
2021-07-31T14:51:23.3908625Z   config.status: executing libtool commands
2021-07-31T14:51:23.3909319Z   config.status: executing default commands
2021-07-31T14:51:23.3909886Z   Making all in src
2021-07-31T14:51:23.3911309Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.3912917Z   make  all-am
2021-07-31T14:51:23.3914089Z   make[2]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.3916422Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT regparse.lo -MD -MP -MF .deps/regparse.Tpo -c -o regparse.lo regparse.c
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2021-07-31T14:51:23.3920078Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT regparse.lo -MD -MP -MF .deps/regparse.Tpo -c regparse.c -o regparse.o >/dev/null 2>&1
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2021-07-31T14:51:23.3929876Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT regexec.lo -MD -MP -MF .deps/regexec.Tpo -c -o regexec.lo regexec.c
2021-07-31T14:51:23.3931681Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT regexec.lo -MD -MP -MF .deps/regexec.Tpo -c regexec.c  -fPIC -DPIC -o .libs/regexec.o
2021-07-31T14:51:23.3933826Z   regexec.c: In function ‘match_at’:
2021-07-31T14:51:23.3935835Z   regexec.c:2577:42: warning: macro expands to multiple statements [-Wmultistatement-macros]
2021-07-31T14:51:23.3937161Z    2577 | #define MATCH_AT_ERROR_RETURN(err_code)  best_len = err_code; goto match_at_end
2021-07-31T14:51:23.3937799Z         |                                          ^~~~~~~~
2021-07-31T14:51:23.3938775Z   regexec.c:2849:26: note: in expansion of macro ‘MATCH_AT_ERROR_RETURN’
2021-07-31T14:51:23.3939553Z    2849 |               if (r < 0) MATCH_AT_ERROR_RETURN(r);
2021-07-31T14:51:23.3940028Z         |                          ^~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.3941040Z   regexec.c:2849:15: note: some parts of macro expansion are not guarded by this ‘if’ clause
2021-07-31T14:51:23.3941801Z    2849 |               if (r < 0) MATCH_AT_ERROR_RETURN(r);
2021-07-31T14:51:23.3942247Z         |               ^~
2021-07-31T14:51:23.3943420Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT regexec.lo -MD -MP -MF .deps/regexec.Tpo -c regexec.c -o regexec.o >/dev/null 2>&1
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2021-07-31T14:51:23.3955512Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT regerror.lo -MD -MP -MF .deps/regerror.Tpo -c regerror.c -o regerror.o >/dev/null 2>&1
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2021-07-31T14:51:23.3997880Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT regposix.lo -MD -MP -MF .deps/regposix.Tpo -c regposix.c -o regposix.o >/dev/null 2>&1
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2021-07-31T14:51:23.4172263Z   mv -f .deps/iso8859_14.Tpo .deps/iso8859_14.Plo
2021-07-31T14:51:23.4173537Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c -o iso8859_15.lo iso8859_15.c
2021-07-31T14:51:23.4175461Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c iso8859_15.c  -fPIC -DPIC -o .libs/iso8859_15.o
2021-07-31T14:51:23.4177078Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c iso8859_15.c -o iso8859_15.o >/dev/null 2>&1
2021-07-31T14:51:23.4178164Z   mv -f .deps/iso8859_15.Tpo .deps/iso8859_15.Plo
2021-07-31T14:51:23.4179427Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c -o iso8859_16.lo iso8859_16.c
2021-07-31T14:51:23.4180960Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c iso8859_16.c  -fPIC -DPIC -o .libs/iso8859_16.o
2021-07-31T14:51:23.4182459Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c iso8859_16.c -o iso8859_16.o >/dev/null 2>&1
2021-07-31T14:51:23.4183544Z   mv -f .deps/iso8859_16.Tpo .deps/iso8859_16.Plo
2021-07-31T14:51:23.4184767Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c -o euc_tw.lo euc_tw.c
2021-07-31T14:51:23.4186312Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c euc_tw.c  -fPIC -DPIC -o .libs/euc_tw.o
2021-07-31T14:51:23.4187807Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c euc_tw.c -o euc_tw.o >/dev/null 2>&1
2021-07-31T14:51:23.4188857Z   mv -f .deps/euc_tw.Tpo .deps/euc_tw.Plo
2021-07-31T14:51:23.4190090Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c -o euc_kr.lo euc_kr.c
2021-07-31T14:51:23.4191775Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c euc_kr.c  -fPIC -DPIC -o .libs/euc_kr.o
2021-07-31T14:51:23.4193243Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c euc_kr.c -o euc_kr.o >/dev/null 2>&1
2021-07-31T14:51:23.4194306Z   mv -f .deps/euc_kr.Tpo .deps/euc_kr.Plo
2021-07-31T14:51:23.4195510Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c -o big5.lo big5.c
2021-07-31T14:51:23.4196970Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c big5.c  -fPIC -DPIC -o .libs/big5.o
2021-07-31T14:51:23.4198405Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c big5.c -o big5.o >/dev/null 2>&1
2021-07-31T14:51:23.4199431Z   mv -f .deps/big5.Tpo .deps/big5.Plo
2021-07-31T14:51:23.4200657Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c -o gb18030.lo gb18030.c
2021-07-31T14:51:23.4202164Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c gb18030.c  -fPIC -DPIC -o .libs/gb18030.o
2021-07-31T14:51:23.4203628Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c gb18030.c -o gb18030.o >/dev/null 2>&1
2021-07-31T14:51:23.4204674Z   mv -f .deps/gb18030.Tpo .deps/gb18030.Plo
2021-07-31T14:51:23.4205868Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c -o koi8_r.lo koi8_r.c
2021-07-31T14:51:23.4210691Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c koi8_r.c  -fPIC -DPIC -o .libs/koi8_r.o
2021-07-31T14:51:23.4212307Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c koi8_r.c -o koi8_r.o >/dev/null 2>&1
2021-07-31T14:51:23.4213347Z   mv -f .deps/koi8_r.Tpo .deps/koi8_r.Plo
2021-07-31T14:51:23.4214737Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c -o cp1251.lo cp1251.c
2021-07-31T14:51:23.4216557Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c cp1251.c  -fPIC -DPIC -o .libs/cp1251.o
2021-07-31T14:51:23.4218014Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c cp1251.c -o cp1251.o >/dev/null 2>&1
2021-07-31T14:51:23.4219064Z   mv -f .deps/cp1251.Tpo .deps/cp1251.Plo
2021-07-31T14:51:23.4220347Z   /bin/bash ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -I..  -Wall -fPIC -MT onig_init.lo -MD -MP -MF .deps/onig_init.Tpo -c -o onig_init.lo onig_init.c
2021-07-31T14:51:23.4221987Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT onig_init.lo -MD -MP -MF .deps/onig_init.Tpo -c onig_init.c  -fPIC -DPIC -o .libs/onig_init.o
2021-07-31T14:51:23.4223585Z   libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Wall -fPIC -MT onig_init.lo -MD -MP -MF .deps/onig_init.Tpo -c onig_init.c -o onig_init.o >/dev/null 2>&1
2021-07-31T14:51:23.4224735Z   mv -f .deps/onig_init.Tpo .deps/onig_init.Plo
2021-07-31T14:51:23.4228961Z   /bin/bash ../libtool  --tag=CC   --mode=link gcc -Wall -fPIC -version-info 5:0:0  -o libonig.la -rpath /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib regparse.lo regcomp.lo regexec.lo regenc.lo regerror.lo regext.lo regsyntax.lo regtrav.lo regversion.lo st.lo reggnu.lo regposix.lo regposerr.lo unicode.lo unicode_unfold_key.lo unicode_fold1_key.lo unicode_fold2_key.lo unicode_fold3_key.lo ascii.lo utf8.lo utf16_be.lo utf16_le.lo utf32_be.lo utf32_le.lo euc_jp.lo euc_jp_prop.lo sjis.lo sjis_prop.lo iso8859_1.lo iso8859_2.lo iso8859_3.lo iso8859_4.lo iso8859_5.lo iso8859_6.lo iso8859_7.lo iso8859_8.lo iso8859_9.lo iso8859_10.lo iso8859_11.lo iso8859_13.lo iso8859_14.lo iso8859_15.lo iso8859_16.lo euc_tw.lo euc_kr.lo big5.lo gb18030.lo koi8_r.lo cp1251.lo onig_init.lo
2021-07-31T14:51:23.4236171Z   libtool: link: gcc -shared  -fPIC -DPIC  .libs/regparse.o .libs/regcomp.o .libs/regexec.o .libs/regenc.o .libs/regerror.o .libs/regext.o .libs/regsyntax.o .libs/regtrav.o .libs/regversion.o .libs/st.o .libs/reggnu.o .libs/regposix.o .libs/regposerr.o .libs/unicode.o .libs/unicode_unfold_key.o .libs/unicode_fold1_key.o .libs/unicode_fold2_key.o .libs/unicode_fold3_key.o .libs/ascii.o .libs/utf8.o .libs/utf16_be.o .libs/utf16_le.o .libs/utf32_be.o .libs/utf32_le.o .libs/euc_jp.o .libs/euc_jp_prop.o .libs/sjis.o .libs/sjis_prop.o .libs/iso8859_1.o .libs/iso8859_2.o .libs/iso8859_3.o .libs/iso8859_4.o .libs/iso8859_5.o .libs/iso8859_6.o .libs/iso8859_7.o .libs/iso8859_8.o .libs/iso8859_9.o .libs/iso8859_10.o .libs/iso8859_11.o .libs/iso8859_13.o .libs/iso8859_14.o .libs/iso8859_15.o .libs/iso8859_16.o .libs/euc_tw.o .libs/euc_kr.o .libs/big5.o .libs/gb18030.o .libs/koi8_r.o .libs/cp1251.o .libs/onig_init.o      -Wl,-soname -Wl,libonig.so.5 -o .libs/libonig.so.5.0.0
2021-07-31T14:51:23.4239917Z   libtool: link: (cd ".libs" && rm -f "libonig.so.5" && ln -s "libonig.so.5.0.0" "libonig.so.5")
2021-07-31T14:51:23.4241095Z   libtool: link: (cd ".libs" && rm -f "libonig.so" && ln -s "libonig.so.5.0.0" "libonig.so")
2021-07-31T14:51:23.4243636Z   libtool: link: ar cru .libs/libonig.a  regparse.o regcomp.o regexec.o regenc.o regerror.o regext.o regsyntax.o regtrav.o regversion.o st.o reggnu.o regposix.o regposerr.o unicode.o unicode_unfold_key.o unicode_fold1_key.o unicode_fold2_key.o unicode_fold3_key.o ascii.o utf8.o utf16_be.o utf16_le.o utf32_be.o utf32_le.o euc_jp.o euc_jp_prop.o sjis.o sjis_prop.o iso8859_1.o iso8859_2.o iso8859_3.o iso8859_4.o iso8859_5.o iso8859_6.o iso8859_7.o iso8859_8.o iso8859_9.o iso8859_10.o iso8859_11.o iso8859_13.o iso8859_14.o iso8859_15.o iso8859_16.o euc_tw.o euc_kr.o big5.o gb18030.o koi8_r.o cp1251.o onig_init.o
2021-07-31T14:51:23.4246294Z   ar: `u' modifier ignored since `D' is the default (see `U')
2021-07-31T14:51:23.4247058Z   libtool: link: ranlib .libs/libonig.a
2021-07-31T14:51:23.4248036Z   libtool: link: ( cd ".libs" && rm -f "libonig.la" && ln -s "../libonig.la" "libonig.la" )
2021-07-31T14:51:23.4249416Z   make[2]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.4251018Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.4251899Z   Making all in test
2021-07-31T14:51:23.4253076Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/test'
2021-07-31T14:51:23.4254205Z   make[1]: Nothing to be done for 'all'.
2021-07-31T14:51:23.4255553Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/test'
2021-07-31T14:51:23.4256486Z   Making all in sample
2021-07-31T14:51:23.4257715Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/sample'
2021-07-31T14:51:23.4259161Z   make[1]: Nothing to be done for 'all'.
2021-07-31T14:51:23.4260401Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/sample'
2021-07-31T14:51:23.4262006Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4'
2021-07-31T14:51:23.4267233Z   sed -e 's,[@]datadir[@],/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/share,g' -e 's,[@]datarootdir[@],/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/share,g' -e 's,[@]PACKAGE_VERSION[@],6.9.4,g' -e 's,[@]prefix[@],/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4,g' -e 's,[@]exec_prefix[@],/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4,g' -e 's,[@]libdir[@],/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib,g' -e 's,[@]includedir[@],/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/include,g' < ./oniguruma.pc.in > oniguruma.pc
2021-07-31T14:51:23.4272005Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4'
2021-07-31T14:51:23.4272897Z   Making install in src
2021-07-31T14:51:23.4274088Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.4275709Z   make[2]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.4277348Z    /usr/bin/mkdir -p '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib'
2021-07-31T14:51:23.4279208Z    /bin/bash ../libtool   --mode=install /usr/bin/install -c   libonig.la '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib'
2021-07-31T14:51:23.4281338Z   libtool: install: /usr/bin/install -c .libs/libonig.so.5.0.0 /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/libonig.so.5.0.0
2021-07-31T14:51:23.4283755Z   libtool: install: (cd /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib && { ln -s -f libonig.so.5.0.0 libonig.so.5 || { rm -f libonig.so.5 && ln -s libonig.so.5.0.0 libonig.so.5; }; })
2021-07-31T14:51:23.4286294Z   libtool: install: (cd /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib && { ln -s -f libonig.so.5.0.0 libonig.so || { rm -f libonig.so && ln -s libonig.so.5.0.0 libonig.so; }; })
2021-07-31T14:51:23.4288543Z   libtool: install: /usr/bin/install -c .libs/libonig.lai /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/libonig.la
2021-07-31T14:51:23.4290726Z   libtool: install: /usr/bin/install -c .libs/libonig.a /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/libonig.a
2021-07-31T14:51:23.4292899Z   libtool: install: chmod 644 /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/libonig.a
2021-07-31T14:51:23.4295012Z   libtool: install: ranlib /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/libonig.a
2021-07-31T14:51:23.4299513Z   libtool: finish: PATH="/tmp/pip-build-env-vba0gypv/overlay/bin:/tmp/pip-build-env-vba0gypv/normal/bin:/opt/hostedtoolcache/Python/3.10.0-beta.4/x64/bin:/opt/hostedtoolcache/Python/3.10.0-beta.4/x64:/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:/home/runner/.local/bin:/opt/pipx_bin:/usr/share/rust/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/snap/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/sbin" ldconfig -n /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib
2021-07-31T14:51:23.4302684Z   ----------------------------------------------------------------------
2021-07-31T14:51:23.4303340Z   Libraries have been installed in:
2021-07-31T14:51:23.4304539Z      /tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib
2021-07-31T14:51:23.4305354Z   
2021-07-31T14:51:23.4305910Z   If you ever happen to want to link against installed libraries
2021-07-31T14:51:23.4306711Z   in a given directory, LIBDIR, you must either use libtool, and
2021-07-31T14:51:23.4308719Z   specify the full pathname of the library, or use the '-LLIBDIR'
2021-07-31T14:51:23.4310015Z   flag during linking and do at least one of the following:
2021-07-31T14:51:23.4315293Z      - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
2021-07-31T14:51:23.4316203Z        during execution
2021-07-31T14:51:23.4317139Z      - add LIBDIR to the 'LD_RUN_PATH' environment variable
2021-07-31T14:51:23.4318392Z        during linking
2021-07-31T14:51:23.4319242Z      - use the '-Wl,-rpath -Wl,LIBDIR' linker flag
2021-07-31T14:51:23.4320209Z      - have your system administrator add LIBDIR to '/etc/ld.so.conf'
2021-07-31T14:51:23.4320792Z   
2021-07-31T14:51:23.4321388Z   See any operating system documentation about shared libraries for
2021-07-31T14:51:23.4322219Z   more information, such as the ld(1) and ld.so(8) manual pages.
2021-07-31T14:51:23.4323155Z   ----------------------------------------------------------------------
2021-07-31T14:51:23.4324525Z    /usr/bin/mkdir -p '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/include'
2021-07-31T14:51:23.4326442Z    /usr/bin/install -c -m 644 oniguruma.h oniggnu.h onigposix.h '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/include'
2021-07-31T14:51:23.4328928Z   make[2]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.4330529Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/src'
2021-07-31T14:51:23.4333127Z   Making install in test
2021-07-31T14:51:23.4334468Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/test'
2021-07-31T14:51:23.4336335Z   make[2]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/test'
2021-07-31T14:51:23.4337575Z   make[2]: Nothing to be done for 'install-exec-am'.
2021-07-31T14:51:23.4338481Z   make[2]: Nothing to be done for 'install-data-am'.
2021-07-31T14:51:23.4340079Z   make[2]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/test'
2021-07-31T14:51:23.4341700Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/test'
2021-07-31T14:51:23.4342650Z   Making install in sample
2021-07-31T14:51:23.4343850Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/sample'
2021-07-31T14:51:23.4345675Z   make[2]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/sample'
2021-07-31T14:51:23.4346985Z   make[2]: Nothing to be done for 'install-exec-am'.
2021-07-31T14:51:23.4347873Z   make[2]: Nothing to be done for 'install-data-am'.
2021-07-31T14:51:23.4349180Z   make[2]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/sample'
2021-07-31T14:51:23.4350817Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4/sample'
2021-07-31T14:51:23.4352404Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4'
2021-07-31T14:51:23.4353987Z   make[2]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4'
2021-07-31T14:51:23.4355602Z    /usr/bin/mkdir -p '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/bin'
2021-07-31T14:51:23.4357840Z    /usr/bin/install -c onig-config '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/bin'
2021-07-31T14:51:23.4359619Z    /usr/bin/mkdir -p '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/pkgconfig'
2021-07-31T14:51:23.4361476Z    /usr/bin/install -c -m 644 oniguruma.pc '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4/lib/pkgconfig'
2021-07-31T14:51:23.4363196Z   make[2]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4'
2021-07-31T14:51:23.4364765Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-6.9.4'
2021-07-31T14:51:23.4366281Z   checking for a BSD-compatible install... /usr/bin/install -c
2021-07-31T14:51:23.4367057Z   checking whether build environment is sane... yes
2021-07-31T14:51:23.4368006Z   checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
2021-07-31T14:51:23.4368639Z   checking for gawk... gawk
2021-07-31T14:51:23.4369185Z   checking whether make sets $(MAKE)... yes
2021-07-31T14:51:23.4369903Z   checking whether make supports nested variables... yes
2021-07-31T14:51:23.4370721Z   checking whether make supports nested variables... (cached) yes
2021-07-31T14:51:23.4371494Z   checking for style of include used by make... GNU
2021-07-31T14:51:23.4372068Z   checking for gcc... gcc
2021-07-31T14:51:23.4372635Z   checking whether the C compiler works... yes
2021-07-31T14:51:23.4373356Z   checking for C compiler default output file name... a.out
2021-07-31T14:51:23.4374062Z   checking for suffix of executables...
2021-07-31T14:51:23.4374724Z   checking whether we are cross compiling... no
2021-07-31T14:51:23.4375744Z   checking for suffix of object files... o
2021-07-31T14:51:23.4376440Z   checking whether we are using the GNU C compiler... yes
2021-07-31T14:51:23.4377925Z   checking whether gcc accepts -g... yes
2021-07-31T14:51:23.4378624Z   checking for gcc option to accept ISO C89... none needed
2021-07-31T14:51:23.4379580Z   checking whether gcc understands -c and -o together... yes
2021-07-31T14:51:23.4380312Z   checking dependency style of gcc... gcc3
2021-07-31T14:51:23.4380870Z   checking for ar... ar
2021-07-31T14:51:23.4381421Z   checking the archiver (ar) interface... ar
2021-07-31T14:51:23.4382511Z   checking whether to enable maintainer-specific portions of Makefiles... no
2021-07-31T14:51:23.4383327Z   checking for gcc... (cached) gcc
2021-07-31T14:51:23.4383990Z   checking whether we are using the GNU C compiler... (cached) yes
2021-07-31T14:51:23.4384919Z   checking whether gcc accepts -g... (cached) yes
2021-07-31T14:51:23.4385645Z   checking for gcc option to accept ISO C89... (cached) none needed
2021-07-31T14:51:23.4386678Z   checking whether gcc understands -c and -o together... (cached) yes
2021-07-31T14:51:23.4387472Z   checking dependency style of gcc... (cached) gcc3
2021-07-31T14:51:23.4388319Z   checking for gcc option to accept ISO C99... none needed
2021-07-31T14:51:23.4389130Z   checking for gcc option to accept ISO Standard C... (cached) none needed
2021-07-31T14:51:23.4390140Z   checking how to run the C preprocessor... gcc -E
2021-07-31T14:51:23.4390919Z   checking for bison... bison -y
2021-07-31T14:51:23.4391784Z   checking build system type... x86_64-unknown-linux-gnu
2021-07-31T14:51:23.4392763Z   checking host system type... x86_64-unknown-linux-gnu
2021-07-31T14:51:23.4393456Z   checking how to print strings... printf
2021-07-31T14:51:23.4394169Z   checking for a sed that does not truncate output... /usr/bin/sed
2021-07-31T14:51:23.4395130Z   checking for grep that handles long lines and -e... /usr/bin/grep
2021-07-31T14:51:23.4395992Z   checking for egrep... /usr/bin/grep -E
2021-07-31T14:51:23.4396776Z   checking for fgrep... /usr/bin/grep -F
2021-07-31T14:51:23.4397354Z   checking for ld used by gcc... /usr/bin/ld
2021-07-31T14:51:23.4397976Z   checking if the linker (/usr/bin/ld) is GNU ld... yes
2021-07-31T14:51:23.4398928Z   checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
2021-07-31T14:51:23.4399906Z   checking the name lister (/usr/bin/nm -B) interface... BSD nm
2021-07-31T14:51:23.4400748Z   checking whether ln -s works... yes
2021-07-31T14:51:23.4401456Z   checking the maximum length of command line arguments... 3145728
2021-07-31T14:51:23.4402752Z   checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
2021-07-31T14:51:23.4404250Z   checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
2021-07-31T14:51:23.4405405Z   checking for /usr/bin/ld option to reload object files... -r
2021-07-31T14:51:23.4406061Z   checking for objdump... objdump
2021-07-31T14:51:23.4406905Z   checking how to recognize dependent libraries... pass_all
2021-07-31T14:51:23.4407563Z   checking for dlltool... no
2021-07-31T14:51:23.4408257Z   checking how to associate runtime and link libraries... printf %s\n
2021-07-31T14:51:23.4409012Z   checking for archiver @FILE support... @
2021-07-31T14:51:23.4409583Z   checking for strip... strip
2021-07-31T14:51:23.4410821Z   checking for ranlib... ranlib
2021-07-31T14:51:23.4411855Z   checking command to parse /usr/bin/nm -B output from gcc object... ok
2021-07-31T14:51:23.4412511Z   checking for sysroot... no
2021-07-31T14:51:23.4413065Z   checking for a working dd... /usr/bin/dd
2021-07-31T14:51:23.4413735Z   checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
2021-07-31T14:51:23.4414353Z   checking for mt... mt
2021-07-31T14:51:23.4415054Z   checking if mt is a manifest tool... no
2021-07-31T14:51:23.4415651Z   checking for ANSI C header files... yes
2021-07-31T14:51:23.4416240Z   checking for sys/types.h... yes
2021-07-31T14:51:23.4416808Z   checking for sys/stat.h... yes
2021-07-31T14:51:23.4417336Z   checking for stdlib.h... yes
2021-07-31T14:51:23.4417877Z   checking for string.h... yes
2021-07-31T14:51:23.4418403Z   checking for memory.h... yes
2021-07-31T14:51:23.4418963Z   checking for strings.h... yes
2021-07-31T14:51:23.4419540Z   checking for inttypes.h... yes
2021-07-31T14:51:23.4420087Z   checking for stdint.h... yes
2021-07-31T14:51:23.4420629Z   checking for unistd.h... yes
2021-07-31T14:51:23.4421163Z   checking for dlfcn.h... yes
2021-07-31T14:51:23.4421674Z   checking for objdir... .libs
2021-07-31T14:51:23.4422609Z   checking if gcc supports -fno-rtti -fno-exceptions... no
2021-07-31T14:51:23.4423566Z   checking for gcc option to produce PIC... -fPIC -DPIC
2021-07-31T14:51:23.4424450Z   checking if gcc PIC flag -fPIC -DPIC works... yes
2021-07-31T14:51:23.4425290Z   checking if gcc static flag -static works... yes
2021-07-31T14:51:23.4426108Z   checking if gcc supports -c -o file.o... yes
2021-07-31T14:51:23.4426977Z   checking if gcc supports -c -o file.o... (cached) yes
2021-07-31T14:51:23.4428061Z   checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
2021-07-31T14:51:23.4429287Z   checking whether -lc should be explicitly linked in... no
2021-07-31T14:51:23.4430141Z   checking dynamic linker characteristics... GNU/Linux ld.so
2021-07-31T14:51:23.4431011Z   checking how to hardcode library paths into programs... immediate
2021-07-31T14:51:23.4431838Z   checking whether stripping libraries is possible... yes
2021-07-31T14:51:23.4432632Z   checking if libtool supports shared libraries... yes
2021-07-31T14:51:23.4433359Z   checking whether to build shared libraries... yes
2021-07-31T14:51:23.4434093Z   checking whether to build static libraries... yes
2021-07-31T14:51:23.4434727Z   checking for valgrind... no
2021-07-31T14:51:23.4435506Z   configure: WARNING: valgrind is required to test jq.
2021-07-31T14:51:23.4436308Z   checking for memmem... yes
2021-07-31T14:51:23.4437185Z   checking for mkstemp... yes
2021-07-31T14:51:23.4437760Z   checking shlwapi.h usability... no
2021-07-31T14:51:23.4438396Z   checking shlwapi.h presence... no
2021-07-31T14:51:23.4438977Z   checking for shlwapi.h... no
2021-07-31T14:51:23.4439518Z   checking for bundle... no
2021-07-31T14:51:23.4440197Z   checking for Ruby dependencies... configure: WARNING:
2021-07-31T14:51:23.4440813Z   *****************************************************************
2021-07-31T14:51:23.4441471Z   *  Ruby dependencies for building jq documentation not found.   *
2021-07-31T14:51:23.4442273Z   *  You can still build, install and hack on jq, but the manpage *
2021-07-31T14:51:23.4442982Z   *  will not be rebuilt and some of the tests will not run.      *
2021-07-31T14:51:23.4443752Z   *  See docs/README.md for how to install the docs dependencies. *
2021-07-31T14:51:23.4444387Z   *****************************************************************
2021-07-31T14:51:23.4444754Z   no
2021-07-31T14:51:23.4445290Z   checking for size_t... yes
2021-07-31T14:51:23.4445833Z   checking for working alloca.h... yes
2021-07-31T14:51:23.4446401Z   checking for alloca... yes
2021-07-31T14:51:23.4446929Z   checking for isatty... yes
2021-07-31T14:51:23.4447434Z   checking for _isatty... no
2021-07-31T14:51:23.4447974Z   checking for strptime... yes
2021-07-31T14:51:23.4448533Z   checking for strftime... yes
2021-07-31T14:51:23.4449057Z   checking for timegm... yes
2021-07-31T14:51:23.4449582Z   checking for gmtime_r... yes
2021-07-31T14:51:23.4450084Z   checking for gmtime... yes
2021-07-31T14:51:23.4450624Z   checking for localtime_r... yes
2021-07-31T14:51:23.4451186Z   checking for localtime... yes
2021-07-31T14:51:23.4451767Z   checking for gettimeofday... yes
2021-07-31T14:51:23.4452389Z   checking for struct tm.tm_gmtoff... yes
2021-07-31T14:51:23.4452975Z   checking for struct tm.__tm_gmtoff... no
2021-07-31T14:51:23.4453787Z   checking for acos in -lm... yes
2021-07-31T14:51:23.4454479Z   checking for acosh in -lm... yes
2021-07-31T14:51:23.4455512Z   checking for asin in -lm... yes
2021-07-31T14:51:23.4456220Z   checking for asinh in -lm... yes
2021-07-31T14:51:23.4456917Z   checking for atan2 in -lm... yes
2021-07-31T14:51:23.4457593Z   checking for atan in -lm... yes
2021-07-31T14:51:23.4458294Z   checking for atanh in -lm... yes
2021-07-31T14:51:23.4459019Z   checking for cbrt in -lm... yes
2021-07-31T14:51:23.4459724Z   checking for ceil in -lm... yes
2021-07-31T14:51:23.4460439Z   checking for copysign in -lm... yes
2021-07-31T14:51:23.4461131Z   checking for cos in -lm... yes
2021-07-31T14:51:23.4462582Z   checking for cosh in -lm... yes
2021-07-31T14:51:23.4463276Z   checking for drem in -lm... yes
2021-07-31T14:51:23.4463949Z   checking for erf in -lm... yes
2021-07-31T14:51:23.4464639Z   checking for erfc in -lm... yes
2021-07-31T14:51:23.4465342Z   checking for exp10 in -lm... yes
2021-07-31T14:51:23.4466026Z   checking for exp2 in -lm... yes
2021-07-31T14:51:23.4466717Z   checking for exp in -lm... yes
2021-07-31T14:51:23.4467413Z   checking for expm1 in -lm... yes
2021-07-31T14:51:23.4468107Z   checking for fabs in -lm... yes
2021-07-31T14:51:23.4468787Z   checking for fdim in -lm... yes
2021-07-31T14:51:23.4469459Z   checking for floor in -lm... yes
2021-07-31T14:51:23.4470312Z   checking for fma in -lm... yes
2021-07-31T14:51:23.4471037Z   checking for fmax in -lm... yes
2021-07-31T14:51:23.4471721Z   checking for fmin in -lm... yes
2021-07-31T14:51:23.4472403Z   checking for fmod in -lm... yes
2021-07-31T14:51:23.4473080Z   checking for frexp in -lm... yes
2021-07-31T14:51:23.4473780Z   checking for gamma in -lm... yes
2021-07-31T14:51:23.4474473Z   checking for hypot in -lm... yes
2021-07-31T14:51:23.4475137Z   checking for j0 in -lm... yes
2021-07-31T14:51:23.4475801Z   checking for j1 in -lm... yes
2021-07-31T14:51:23.4476449Z   checking for jn in -lm... yes
2021-07-31T14:51:23.4477133Z   checking for ldexp in -lm... yes
2021-07-31T14:51:23.4477835Z   checking for lgamma in -lm... yes
2021-07-31T14:51:23.4478530Z   checking for log10 in -lm... yes
2021-07-31T14:51:23.4479225Z   checking for log1p in -lm... yes
2021-07-31T14:51:23.4479918Z   checking for log2 in -lm... yes
2021-07-31T14:51:23.4480586Z   checking for log in -lm... yes
2021-07-31T14:51:23.4481271Z   checking for logb in -lm... yes
2021-07-31T14:51:23.4481940Z   checking for modf in -lm... yes
2021-07-31T14:51:23.4482636Z   checking for lgamma_r in -lm... yes
2021-07-31T14:51:23.4483377Z   checking for nearbyint in -lm... yes
2021-07-31T14:51:23.4484114Z   checking for nextafter in -lm... yes
2021-07-31T14:51:23.4484878Z   checking for nexttoward in -lm... yes
2021-07-31T14:51:23.4485607Z   checking for pow10 in -lm... no
2021-07-31T14:51:23.4486269Z   checking for pow in -lm... yes
2021-07-31T14:51:23.4486994Z   checking for remainder in -lm... yes
2021-07-31T14:51:23.4487690Z   checking for rint in -lm... yes
2021-07-31T14:51:23.4488375Z   checking for round in -lm... yes
2021-07-31T14:51:23.4489067Z   checking for scalb in -lm... yes
2021-07-31T14:51:23.4489912Z   checking for scalbln in -lm... yes
2021-07-31T14:51:23.4490668Z   checking for significand in -lm... yes
2021-07-31T14:51:23.4491387Z   checking for sin in -lm... yes
2021-07-31T14:51:23.4492054Z   checking for sinh in -lm... yes
2021-07-31T14:51:23.4492746Z   checking for sqrt in -lm... yes
2021-07-31T14:51:23.4493415Z   checking for tan in -lm... yes
2021-07-31T14:51:23.4494093Z   checking for tanh in -lm... yes
2021-07-31T14:51:23.4494929Z   checking for tgamma in -lm... yes
2021-07-31T14:51:23.4495807Z   checking for trunc in -lm... yes
2021-07-31T14:51:23.4496495Z   checking for y0 in -lm... yes
2021-07-31T14:51:23.4497143Z   checking for y1 in -lm... yes
2021-07-31T14:51:23.4497818Z   checking for yn in -lm... yes
2021-07-31T14:51:23.4498578Z   checking for thread-local storage... yes
2021-07-31T14:51:23.4499279Z   checking whether byte ordering is bigendian... no
2021-07-31T14:51:23.4499983Z   checking oniguruma.h usability... yes
2021-07-31T14:51:23.4500657Z   checking oniguruma.h presence... no
2021-07-31T14:51:23.4501272Z   checking for oniguruma.h... yes
2021-07-31T14:51:23.4502075Z   checking for onig_version in -lonig... yes
2021-07-31T14:51:23.4502807Z   checking that generated files are newer than configure... done
2021-07-31T14:51:23.4503562Z   configure: creating ./config.status
2021-07-31T14:51:23.4504200Z   config.status: creating Makefile
2021-07-31T14:51:23.4504864Z   config.status: executing depfiles commands
2021-07-31T14:51:23.4505582Z   config.status: executing libtool commands
2021-07-31T14:51:23.4506180Z     GEN      src/builtin.inc
2021-07-31T14:51:23.4506649Z     GEN      src/version.h
2021-07-31T14:51:23.4507300Z   make  all-recursive
2021-07-31T14:51:23.4508450Z   make[1]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/jq-1.6'
2021-07-31T14:51:23.4510010Z   make[2]: Entering directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/jq-1.6'
2021-07-31T14:51:23.4511917Z     CC       src/builtin.lo
2021-07-31T14:51:23.4512895Z   In file included from /usr/include/x86_64-linux-gnu/sys/time.h:21,
2021-07-31T14:51:23.4514125Z                    from src/builtin.c:10:
2021-07-31T14:51:23.4515607Z   /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
2021-07-31T14:51:23.4519052Z     187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
2021-07-31T14:51:23.4520213Z         |   ^~~~~~~
2021-07-31T14:51:23.4521891Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4523058Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4523536Z         |    ^
2021-07-31T14:51:23.4524277Z   src/libm.h:2:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4524816Z       2 | LIBM_DD(acos)
2021-07-31T14:51:23.4525237Z         | ^~~~~~~
2021-07-31T14:51:23.4526645Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4527813Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4528442Z         |    ^
2021-07-31T14:51:23.4529335Z   src/libm.h:7:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4529873Z       7 | LIBM_DD(acosh)
2021-07-31T14:51:23.4530269Z         | ^~~~~~~
2021-07-31T14:51:23.4531668Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4532814Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4533284Z         |    ^
2021-07-31T14:51:23.4533994Z   src/libm.h:12:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4534749Z      12 | LIBM_DD(asin)
2021-07-31T14:51:23.4535319Z         | ^~~~~~~
2021-07-31T14:51:23.4536805Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4537954Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4538418Z         |    ^
2021-07-31T14:51:23.4540425Z   src/libm.h:17:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4541034Z      17 | LIBM_DD(asinh)
2021-07-31T14:51:23.4541591Z         | ^~~~~~~
2021-07-31T14:51:23.4543246Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4544427Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4544920Z         |    ^
2021-07-31T14:51:23.4545623Z   src/libm.h:22:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4546178Z      22 | LIBM_DD(atan)
2021-07-31T14:51:23.4546568Z         | ^~~~~~~
2021-07-31T14:51:23.4548327Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4549953Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4550406Z         |    ^
2021-07-31T14:51:23.4551305Z   src/libm.h:27:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4551875Z      27 | LIBM_DDD(atan2)
2021-07-31T14:51:23.4552278Z         | ^~~~~~~~
2021-07-31T14:51:23.4554528Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4555743Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4556367Z         |    ^
2021-07-31T14:51:23.4557055Z   src/libm.h:32:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4557976Z      32 | LIBM_DD(atanh)
2021-07-31T14:51:23.4558375Z         | ^~~~~~~
2021-07-31T14:51:23.4559899Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4561030Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4561480Z         |    ^
2021-07-31T14:51:23.4562329Z   src/libm.h:37:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4563979Z      37 | LIBM_DD(cbrt)
2021-07-31T14:51:23.4564367Z         | ^~~~~~~
2021-07-31T14:51:23.4567084Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4568297Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4568749Z         |    ^
2021-07-31T14:51:23.4569572Z   src/libm.h:42:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4570119Z      42 | LIBM_DD(cos)
2021-07-31T14:51:23.4572142Z         | ^~~~~~~
2021-07-31T14:51:23.4573693Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4575145Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4575614Z         |    ^
2021-07-31T14:51:23.4576383Z   src/libm.h:47:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4576942Z      47 | LIBM_DD(cosh)
2021-07-31T14:51:23.4577316Z         | ^~~~~~~
2021-07-31T14:51:23.4580799Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4582883Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4583420Z         |    ^
2021-07-31T14:51:23.4585823Z   src/libm.h:52:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4586570Z      52 | LIBM_DD(exp)
2021-07-31T14:51:23.4587142Z         | ^~~~~~~
2021-07-31T14:51:23.4588657Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4589809Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4590277Z         |    ^
2021-07-31T14:51:23.4590993Z   src/libm.h:57:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4591537Z      57 | LIBM_DD(exp2)
2021-07-31T14:51:23.4591954Z         | ^~~~~~~
2021-07-31T14:51:23.4593352Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4594507Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4594976Z         |    ^
2021-07-31T14:51:23.4595666Z   src/libm.h:62:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4596219Z      62 | LIBM_DD(floor)
2021-07-31T14:51:23.4596618Z         | ^~~~~~~
2021-07-31T14:51:23.4598197Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4599524Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4599987Z         |    ^
2021-07-31T14:51:23.4600725Z   src/libm.h:67:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4601279Z      67 | LIBM_DDD(hypot)
2021-07-31T14:51:23.4601679Z         | ^~~~~~~~
2021-07-31T14:51:23.4603233Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4604430Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4604898Z         |    ^
2021-07-31T14:51:23.4605648Z   src/libm.h:72:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4606171Z      72 | LIBM_DD(j0)
2021-07-31T14:51:23.4606555Z         | ^~~~~~~
2021-07-31T14:51:23.4607929Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4609098Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4609581Z         |    ^
2021-07-31T14:51:23.4610275Z   src/libm.h:77:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4610818Z      77 | LIBM_DD(j1)
2021-07-31T14:51:23.4611196Z         | ^~~~~~~
2021-07-31T14:51:23.4612705Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4613870Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4614338Z         |    ^
2021-07-31T14:51:23.4615432Z   src/libm.h:82:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4615994Z      82 | LIBM_DD(log)
2021-07-31T14:51:23.4616360Z         | ^~~~~~~
2021-07-31T14:51:23.4617799Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4619128Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4619578Z         |    ^
2021-07-31T14:51:23.4620328Z   src/libm.h:87:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4620882Z      87 | LIBM_DD(log10)
2021-07-31T14:51:23.4621267Z         | ^~~~~~~
2021-07-31T14:51:23.4622654Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4623816Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4624263Z         |    ^
2021-07-31T14:51:23.4624966Z   src/libm.h:92:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4625517Z      92 | LIBM_DD(log2)
2021-07-31T14:51:23.4625886Z         | ^~~~~~~
2021-07-31T14:51:23.4627475Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4628809Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4629259Z         |    ^
2021-07-31T14:51:23.4629994Z   src/libm.h:97:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4630557Z      97 | LIBM_DDD(pow)
2021-07-31T14:51:23.4630932Z         | ^~~~~~~~
2021-07-31T14:51:23.4632543Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4633867Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4634317Z         |    ^
2021-07-31T14:51:23.4635199Z   src/libm.h:102:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4635792Z     102 | LIBM_DDD(remainder)
2021-07-31T14:51:23.4636218Z         | ^~~~~~~~
2021-07-31T14:51:23.4637721Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4638902Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4639349Z         |    ^
2021-07-31T14:51:23.4640090Z   src/libm.h:107:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4640637Z     107 | LIBM_DD(sin)
2021-07-31T14:51:23.4641000Z         | ^~~~~~~
2021-07-31T14:51:23.4642386Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4643644Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4644089Z         |    ^
2021-07-31T14:51:23.4644826Z   src/libm.h:112:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4645374Z     112 | LIBM_DD(sinh)
2021-07-31T14:51:23.4645762Z         | ^~~~~~~
2021-07-31T14:51:23.4647159Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4648304Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4648770Z         |    ^
2021-07-31T14:51:23.4649481Z   src/libm.h:117:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4650012Z     117 | LIBM_DD(sqrt)
2021-07-31T14:51:23.4650397Z         | ^~~~~~~
2021-07-31T14:51:23.4651784Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4652930Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4653516Z         |    ^
2021-07-31T14:51:23.4654240Z   src/libm.h:122:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4655024Z     122 | LIBM_DD(tan)
2021-07-31T14:51:23.4655433Z         | ^~~~~~~
2021-07-31T14:51:23.4656872Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4658401Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4658908Z         |    ^
2021-07-31T14:51:23.4659861Z   src/libm.h:127:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4660433Z     127 | LIBM_DD(tanh)
2021-07-31T14:51:23.4660828Z         | ^~~~~~~
2021-07-31T14:51:23.4664541Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4666564Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4667038Z         |    ^
2021-07-31T14:51:23.4667876Z   src/libm.h:132:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4668447Z     132 | LIBM_DD(tgamma)
2021-07-31T14:51:23.4668855Z         | ^~~~~~~
2021-07-31T14:51:23.4670272Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4671436Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4671885Z         |    ^
2021-07-31T14:51:23.4672653Z   src/libm.h:137:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4673892Z     137 | LIBM_DD(y0)
2021-07-31T14:51:23.4674261Z         | ^~~~~~~
2021-07-31T14:51:23.4675830Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4677027Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4677479Z         |    ^
2021-07-31T14:51:23.4678205Z   src/libm.h:142:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4678963Z     142 | LIBM_DD(y1)
2021-07-31T14:51:23.4679356Z         | ^~~~~~~
2021-07-31T14:51:23.4681001Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4682334Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4683736Z         |    ^
2021-07-31T14:51:23.4684596Z   src/libm.h:147:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4685135Z     147 | LIBM_DDD(jn)
2021-07-31T14:51:23.4685527Z         | ^~~~~~~~
2021-07-31T14:51:23.4687135Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4688477Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4688949Z         |    ^
2021-07-31T14:51:23.4689678Z   src/libm.h:150:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4690210Z     150 | LIBM_DDD(yn)
2021-07-31T14:51:23.4690596Z         | ^~~~~~~~
2021-07-31T14:51:23.4692000Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4694057Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4694531Z         |    ^
2021-07-31T14:51:23.4696800Z   src/libm.h:153:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4698357Z     153 | LIBM_DD(ceil)
2021-07-31T14:51:23.4698754Z         | ^~~~~~~
2021-07-31T14:51:23.4700490Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4701834Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4702302Z         |    ^
2021-07-31T14:51:23.4704228Z   src/libm.h:158:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4704844Z     158 | LIBM_DDD(copysign)
2021-07-31T14:51:23.4705274Z         | ^~~~~~~~
2021-07-31T14:51:23.4706932Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4708423Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4708876Z         |    ^
2021-07-31T14:51:23.4709567Z   src/libm.h:163:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4710117Z     163 | LIBM_DDD(drem)
2021-07-31T14:51:23.4710512Z         | ^~~~~~~~
2021-07-31T14:51:23.4712067Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4716931Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4717460Z         |    ^
2021-07-31T14:51:23.4718310Z   src/libm.h:168:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4718871Z     168 | LIBM_DD(erf)
2021-07-31T14:51:23.4719244Z         | ^~~~~~~
2021-07-31T14:51:23.4720658Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4721849Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4722296Z         |    ^
2021-07-31T14:51:23.4723761Z   src/libm.h:173:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4725027Z     173 | LIBM_DD(erfc)
2021-07-31T14:51:23.4725488Z         | ^~~~~~~
2021-07-31T14:51:23.4727542Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4728722Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4729174Z         |    ^
2021-07-31T14:51:23.4729955Z   src/libm.h:178:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4730523Z     178 | LIBM_DD(exp10)
2021-07-31T14:51:23.4730905Z         | ^~~~~~~
2021-07-31T14:51:23.4733355Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4734577Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4735336Z         |    ^
2021-07-31T14:51:23.4736197Z   src/libm.h:183:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4737599Z     183 | LIBM_DD(expm1)
2021-07-31T14:51:23.4738050Z         | ^~~~~~~
2021-07-31T14:51:23.4739540Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4740693Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4741160Z         |    ^
2021-07-31T14:51:23.4741875Z   src/libm.h:188:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4742409Z     188 | LIBM_DD(fabs)
2021-07-31T14:51:23.4743441Z         | ^~~~~~~
2021-07-31T14:51:23.4745903Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4747257Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4747728Z         |    ^
2021-07-31T14:51:23.4748517Z   src/libm.h:193:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4749089Z     193 | LIBM_DDD(fdim)
2021-07-31T14:51:23.4749482Z         | ^~~~~~~~
2021-07-31T14:51:23.4751172Z   src/builtin.c:1573:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4752579Z    1573 |   {(cfunction_ptr)f_ ## name, #name, 4},
2021-07-31T14:51:23.4753900Z         |    ^
2021-07-31T14:51:23.4755227Z   src/libm.h:198:1: note: in expansion of macro ‘LIBM_DDDD’
2021-07-31T14:51:23.4755801Z     198 | LIBM_DDDD(fma)
2021-07-31T14:51:23.4756204Z         | ^~~~~~~~~
2021-07-31T14:51:23.4757906Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4759223Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4759697Z         |    ^
2021-07-31T14:51:23.4760431Z   src/libm.h:203:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4760976Z     203 | LIBM_DDD(fmax)
2021-07-31T14:51:23.4761368Z         | ^~~~~~~~
2021-07-31T14:51:23.4763607Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4765377Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4765847Z         |    ^
2021-07-31T14:51:23.4766874Z   src/libm.h:208:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4767560Z     208 | LIBM_DDD(fmin)
2021-07-31T14:51:23.4767997Z         | ^~~~~~~~
2021-07-31T14:51:23.4769748Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4771673Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4772145Z         |    ^
2021-07-31T14:51:23.4773619Z   src/libm.h:213:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4774198Z     213 | LIBM_DDD(fmod)
2021-07-31T14:51:23.4775228Z         | ^~~~~~~~
2021-07-31T14:51:23.4777304Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4778509Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4778977Z         |    ^
2021-07-31T14:51:23.4779694Z   src/libm.h:218:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4780255Z     218 | LIBM_DD(gamma)
2021-07-31T14:51:23.4780654Z         | ^~~~~~~
2021-07-31T14:51:23.4782036Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4784756Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4785235Z         |    ^
2021-07-31T14:51:23.4786047Z   src/libm.h:223:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4786852Z     223 | LIBM_DD(lgamma)
2021-07-31T14:51:23.4787236Z         | ^~~~~~~
2021-07-31T14:51:23.4788693Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4789860Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4790841Z         |    ^
2021-07-31T14:51:23.4791681Z   src/libm.h:228:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4792243Z     228 | LIBM_DD(log1p)
2021-07-31T14:51:23.4793302Z         | ^~~~~~~
2021-07-31T14:51:23.4794787Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4795960Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4796909Z         |    ^
2021-07-31T14:51:23.4797734Z   src/libm.h:233:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4798272Z     233 | LIBM_DD(logb)
2021-07-31T14:51:23.4798666Z         | ^~~~~~~
2021-07-31T14:51:23.4800079Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4801230Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4801697Z         |    ^
2021-07-31T14:51:23.4802428Z   src/libm.h:238:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4803618Z     238 | LIBM_DD(nearbyint)
2021-07-31T14:51:23.4804463Z         | ^~~~~~~
2021-07-31T14:51:23.4806156Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4807487Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4807951Z         |    ^
2021-07-31T14:51:23.4808681Z   src/libm.h:243:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4809258Z     243 | LIBM_DDD(nextafter)
2021-07-31T14:51:23.4809856Z         | ^~~~~~~~
2021-07-31T14:51:23.4811515Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4814924Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4815612Z         |    ^
2021-07-31T14:51:23.4816489Z   src/libm.h:248:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4817101Z     248 | LIBM_DDD(nexttoward)
2021-07-31T14:51:23.4817601Z         | ^~~~~~~~
2021-07-31T14:51:23.4819554Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4820784Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4821255Z         |    ^
2021-07-31T14:51:23.4822048Z   src/libm.h:258:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4823245Z     258 | LIBM_DD(rint)
2021-07-31T14:51:23.4823668Z         | ^~~~~~~
2021-07-31T14:51:23.4825605Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4826811Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4827278Z         |    ^
2021-07-31T14:51:23.4828057Z   src/libm.h:263:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4828620Z     263 | LIBM_DD(round)
2021-07-31T14:51:23.4829148Z         | ^~~~~~~
2021-07-31T14:51:23.4831161Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4832506Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4834078Z         |    ^
2021-07-31T14:51:23.4834906Z   src/libm.h:268:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4835472Z     268 | LIBM_DDD(scalb)
2021-07-31T14:51:23.4835853Z         | ^~~~~~~~
2021-07-31T14:51:23.4837458Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4838791Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4839241Z         |    ^
2021-07-31T14:51:23.4839977Z   src/libm.h:273:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4840564Z     273 | LIBM_DDD(scalbln)
2021-07-31T14:51:23.4840972Z         | ^~~~~~~~
2021-07-31T14:51:23.4842361Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4844346Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4844800Z         |    ^
2021-07-31T14:51:23.4845596Z   src/libm.h:278:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4846194Z     278 | LIBM_DD(significand)
2021-07-31T14:51:23.4846607Z         | ^~~~~~~
2021-07-31T14:51:23.4847996Z   src/builtin.c:1565:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4849154Z    1565 |   {(cfunction_ptr)f_ ## name,  #name, 1},
2021-07-31T14:51:23.4849618Z         |    ^
2021-07-31T14:51:23.4850485Z   src/libm.h:283:1: note: in expansion of macro ‘LIBM_DD’
2021-07-31T14:51:23.4851015Z     283 | LIBM_DD(trunc)
2021-07-31T14:51:23.4851376Z         | ^~~~~~~
2021-07-31T14:51:23.4853724Z   src/builtin.c:1569:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4855265Z    1569 |   {(cfunction_ptr)f_ ## name, #name, 3},
2021-07-31T14:51:23.4855713Z         |    ^
2021-07-31T14:51:23.4856528Z   src/libm.h:288:1: note: in expansion of macro ‘LIBM_DDD’
2021-07-31T14:51:23.4857231Z     288 | LIBM_DDD(ldexp)
2021-07-31T14:51:23.4857613Z         | ^~~~~~~~
2021-07-31T14:51:23.4859613Z   src/builtin.c:1579:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4860933Z    1579 |   {(cfunction_ptr)f_frexp,"frexp", 1},
2021-07-31T14:51:23.4861383Z         |    ^
2021-07-31T14:51:23.4863486Z   src/builtin.c:1582:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4864661Z    1582 |   {(cfunction_ptr)f_modf,"modf", 1},
2021-07-31T14:51:23.4865114Z         |    ^
2021-07-31T14:51:23.4866578Z   src/builtin.c:1585:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4868060Z    1585 |   {(cfunction_ptr)f_lgamma_r,"lgamma_r", 1},
2021-07-31T14:51:23.4868529Z         |    ^
2021-07-31T14:51:23.4870126Z   src/builtin.c:1587:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4871685Z    1587 |   {(cfunction_ptr)f_plus, "_plus", 3},
2021-07-31T14:51:23.4872143Z         |    ^
2021-07-31T14:51:23.4874129Z   src/builtin.c:1588:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4875306Z    1588 |   {(cfunction_ptr)f_negate, "_negate", 1},
2021-07-31T14:51:23.4875788Z         |    ^
2021-07-31T14:51:23.4877388Z   src/builtin.c:1589:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4878718Z    1589 |   {(cfunction_ptr)f_minus, "_minus", 3},
2021-07-31T14:51:23.4879161Z         |    ^
2021-07-31T14:51:23.4880765Z   src/builtin.c:1590:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4882118Z    1590 |   {(cfunction_ptr)f_multiply, "_multiply", 3},
2021-07-31T14:51:23.4883060Z         |    ^
2021-07-31T14:51:23.4884724Z   src/builtin.c:1591:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4886056Z    1591 |   {(cfunction_ptr)f_divide, "_divide", 3},
2021-07-31T14:51:23.4886515Z         |    ^
2021-07-31T14:51:23.4888110Z   src/builtin.c:1592:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4889571Z    1592 |   {(cfunction_ptr)f_mod, "_mod", 3},
2021-07-31T14:51:23.4890021Z         |    ^
2021-07-31T14:51:23.4891594Z   src/builtin.c:1593:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4892922Z    1593 |   {(cfunction_ptr)f_dump, "tojson", 1},
2021-07-31T14:51:23.4893370Z         |    ^
2021-07-31T14:51:23.4894912Z   src/builtin.c:1594:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4896255Z    1594 |   {(cfunction_ptr)f_json_parse, "fromjson", 1},
2021-07-31T14:51:23.4896897Z         |    ^
2021-07-31T14:51:23.4898369Z   src/builtin.c:1595:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4899572Z    1595 |   {(cfunction_ptr)f_tonumber, "tonumber", 1},
2021-07-31T14:51:23.4900056Z         |    ^
2021-07-31T14:51:23.4901447Z   src/builtin.c:1596:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4902640Z    1596 |   {(cfunction_ptr)f_tostring, "tostring", 1},
2021-07-31T14:51:23.4903118Z         |    ^
2021-07-31T14:51:23.4904506Z   src/builtin.c:1597:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4905672Z    1597 |   {(cfunction_ptr)f_keys, "keys", 1},
2021-07-31T14:51:23.4906108Z         |    ^
2021-07-31T14:51:23.4907501Z   src/builtin.c:1598:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4908736Z    1598 |   {(cfunction_ptr)f_keys_unsorted, "keys_unsorted", 1},
2021-07-31T14:51:23.4909253Z         |    ^
2021-07-31T14:51:23.4910752Z   src/builtin.c:1599:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4912057Z    1599 |   {(cfunction_ptr)f_startswith, "startswith", 2},
2021-07-31T14:51:23.4912564Z         |    ^
2021-07-31T14:51:23.4915296Z   src/builtin.c:1600:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4916654Z    1600 |   {(cfunction_ptr)f_endswith, "endswith", 2},
2021-07-31T14:51:23.4917308Z         |    ^
2021-07-31T14:51:23.4919591Z   src/builtin.c:1601:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4921522Z    1601 |   {(cfunction_ptr)f_ltrimstr, "ltrimstr", 2},
2021-07-31T14:51:23.4922426Z         |    ^
2021-07-31T14:51:23.4924064Z   src/builtin.c:1602:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4925728Z    1602 |   {(cfunction_ptr)f_rtrimstr, "rtrimstr", 2},
2021-07-31T14:51:23.4926460Z         |    ^
2021-07-31T14:51:23.4928795Z   src/builtin.c:1603:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4930071Z    1603 |   {(cfunction_ptr)f_string_split, "split", 2},
2021-07-31T14:51:23.4930547Z         |    ^
2021-07-31T14:51:23.4931952Z   src/builtin.c:1604:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4933186Z    1604 |   {(cfunction_ptr)f_string_explode, "explode", 1},
2021-07-31T14:51:23.4933689Z         |    ^
2021-07-31T14:51:23.4935242Z   src/builtin.c:1605:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4936712Z    1605 |   {(cfunction_ptr)f_string_implode, "implode", 1},
2021-07-31T14:51:23.4937213Z         |    ^
2021-07-31T14:51:23.4939377Z   src/builtin.c:1606:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4940715Z    1606 |   {(cfunction_ptr)f_string_indexes, "_strindices", 2},
2021-07-31T14:51:23.4941237Z         |    ^
2021-07-31T14:51:23.4943285Z   src/builtin.c:1607:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4944769Z    1607 |   {(cfunction_ptr)f_setpath, "setpath", 3}, // FIXME typechecking
2021-07-31T14:51:23.4945365Z         |    ^
2021-07-31T14:51:23.4946977Z   src/builtin.c:1608:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4948266Z    1608 |   {(cfunction_ptr)f_getpath, "getpath", 2},
2021-07-31T14:51:23.4948740Z         |    ^
2021-07-31T14:51:23.4950239Z   src/builtin.c:1609:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4951513Z    1609 |   {(cfunction_ptr)f_delpaths, "delpaths", 2},
2021-07-31T14:51:23.4952001Z         |    ^
2021-07-31T14:51:23.4953485Z   src/builtin.c:1610:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4954711Z    1610 |   {(cfunction_ptr)f_has, "has", 2},
2021-07-31T14:51:23.4955139Z         |    ^
2021-07-31T14:51:23.4956900Z   src/builtin.c:1611:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4958393Z    1611 |   {(cfunction_ptr)f_equal, "_equal", 3},
2021-07-31T14:51:23.4958825Z         |    ^
2021-07-31T14:51:23.4960590Z   src/builtin.c:1612:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4961943Z    1612 |   {(cfunction_ptr)f_notequal, "_notequal", 3},
2021-07-31T14:51:23.4962427Z         |    ^
2021-07-31T14:51:23.4964023Z   src/builtin.c:1613:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4965343Z    1613 |   {(cfunction_ptr)f_less, "_less", 3},
2021-07-31T14:51:23.4965782Z         |    ^
2021-07-31T14:51:23.4967529Z   src/builtin.c:1614:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4968879Z    1614 |   {(cfunction_ptr)f_greater, "_greater", 3},
2021-07-31T14:51:23.4969357Z         |    ^
2021-07-31T14:51:23.4970875Z   src/builtin.c:1615:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4972462Z    1615 |   {(cfunction_ptr)f_lesseq, "_lesseq", 3},
2021-07-31T14:51:23.4972941Z         |    ^
2021-07-31T14:51:23.4974558Z   src/builtin.c:1616:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4976220Z    1616 |   {(cfunction_ptr)f_greatereq, "_greatereq", 3},
2021-07-31T14:51:23.4976747Z         |    ^
2021-07-31T14:51:23.4978390Z   src/builtin.c:1617:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4979612Z    1617 |   {(cfunction_ptr)f_contains, "contains", 2},
2021-07-31T14:51:23.4980108Z         |    ^
2021-07-31T14:51:23.4981433Z   src/builtin.c:1618:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4982786Z    1618 |   {(cfunction_ptr)f_length, "length", 1},
2021-07-31T14:51:23.4983259Z         |    ^
2021-07-31T14:51:23.4984629Z   src/builtin.c:1619:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4985915Z    1619 |   {(cfunction_ptr)f_utf8bytelength, "utf8bytelength", 1},
2021-07-31T14:51:23.4986657Z         |    ^
2021-07-31T14:51:23.4987971Z   src/builtin.c:1620:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4989088Z    1620 |   {(cfunction_ptr)f_type, "type", 1},
2021-07-31T14:51:23.4989531Z         |    ^
2021-07-31T14:51:23.4991181Z   src/builtin.c:1621:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4992440Z    1621 |   {(cfunction_ptr)f_isinfinite, "isinfinite", 1},
2021-07-31T14:51:23.4992967Z         |    ^
2021-07-31T14:51:23.4994372Z   src/builtin.c:1622:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4995534Z    1622 |   {(cfunction_ptr)f_isnan, "isnan", 1},
2021-07-31T14:51:23.4995993Z         |    ^
2021-07-31T14:51:23.4997364Z   src/builtin.c:1623:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.4998698Z    1623 |   {(cfunction_ptr)f_isnormal, "isnormal", 1},
2021-07-31T14:51:23.4999171Z         |    ^
2021-07-31T14:51:23.5000675Z   src/builtin.c:1624:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5001872Z    1624 |   {(cfunction_ptr)f_infinite, "infinite", 1},
2021-07-31T14:51:23.5002367Z         |    ^
2021-07-31T14:51:23.5003735Z   src/builtin.c:1625:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5004868Z    1625 |   {(cfunction_ptr)f_nan, "nan", 1},
2021-07-31T14:51:23.5005305Z         |    ^
2021-07-31T14:51:23.5006673Z   src/builtin.c:1626:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5007943Z    1626 |   {(cfunction_ptr)f_sort, "sort", 1},
2021-07-31T14:51:23.5008389Z         |    ^
2021-07-31T14:51:23.5009897Z   src/builtin.c:1627:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5011245Z    1627 |   {(cfunction_ptr)f_sort_by_impl, "_sort_by_impl", 2},
2021-07-31T14:51:23.5011745Z         |    ^
2021-07-31T14:51:23.5013217Z   src/builtin.c:1628:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5015276Z    1628 |   {(cfunction_ptr)f_group_by_impl, "_group_by_impl", 2},
2021-07-31T14:51:23.5015825Z         |    ^
2021-07-31T14:51:23.5017352Z   src/builtin.c:1629:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5018497Z    1629 |   {(cfunction_ptr)f_min, "min", 1},
2021-07-31T14:51:23.5018935Z         |    ^
2021-07-31T14:51:23.5020312Z   src/builtin.c:1630:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5021448Z    1630 |   {(cfunction_ptr)f_max, "max", 1},
2021-07-31T14:51:23.5021889Z         |    ^
2021-07-31T14:51:23.5023370Z   src/builtin.c:1631:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5024655Z    1631 |   {(cfunction_ptr)f_min_by_impl, "_min_by_impl", 2},
2021-07-31T14:51:23.5025144Z         |    ^
2021-07-31T14:51:23.5026778Z   src/builtin.c:1632:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5028076Z    1632 |   {(cfunction_ptr)f_max_by_impl, "_max_by_impl", 2},
2021-07-31T14:51:23.5028566Z         |    ^
2021-07-31T14:51:23.5030068Z   src/builtin.c:1633:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5031310Z    1633 |   {(cfunction_ptr)f_error, "error", 2},
2021-07-31T14:51:23.5031780Z         |    ^
2021-07-31T14:51:23.5033255Z   src/builtin.c:1634:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5034511Z    1634 |   {(cfunction_ptr)f_format, "format", 2},
2021-07-31T14:51:23.5034992Z         |    ^
2021-07-31T14:51:23.5036370Z   src/builtin.c:1635:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5037519Z    1635 |   {(cfunction_ptr)f_env, "env", 1},
2021-07-31T14:51:23.5038019Z         |    ^
2021-07-31T14:51:23.5039389Z   src/builtin.c:1636:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5040535Z    1636 |   {(cfunction_ptr)f_halt, "halt", 1},
2021-07-31T14:51:23.5041110Z         |    ^
2021-07-31T14:51:23.5042628Z   src/builtin.c:1637:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5043913Z    1637 |   {(cfunction_ptr)f_halt_error, "halt_error", 2},
2021-07-31T14:51:23.5044408Z         |    ^
2021-07-31T14:51:23.5045781Z   src/builtin.c:1638:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5047015Z    1638 |   {(cfunction_ptr)f_get_search_list, "get_search_list", 1},
2021-07-31T14:51:23.5047543Z         |    ^
2021-07-31T14:51:23.5048923Z   src/builtin.c:1639:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5050167Z    1639 |   {(cfunction_ptr)f_get_prog_origin, "get_prog_origin", 1},
2021-07-31T14:51:23.5050699Z         |    ^
2021-07-31T14:51:23.5052092Z   src/builtin.c:1640:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5053300Z    1640 |   {(cfunction_ptr)f_get_jq_origin, "get_jq_origin", 1},
2021-07-31T14:51:23.5053810Z         |    ^
2021-07-31T14:51:23.5055818Z   src/builtin.c:1641:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5057253Z    1641 |   {(cfunction_ptr)f_match, "_match_impl", 4},
2021-07-31T14:51:23.5057734Z         |    ^
2021-07-31T14:51:23.5059195Z   src/builtin.c:1642:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5060613Z    1642 |   {(cfunction_ptr)f_modulemeta, "modulemeta", 1},
2021-07-31T14:51:23.5061172Z         |    ^
2021-07-31T14:51:23.5062656Z   src/builtin.c:1643:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5063801Z    1643 |   {(cfunction_ptr)f_input, "_input", 1},
2021-07-31T14:51:23.5064267Z         |    ^
2021-07-31T14:51:23.5065652Z   src/builtin.c:1644:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5066791Z    1644 |   {(cfunction_ptr)f_debug, "debug", 1},
2021-07-31T14:51:23.5067266Z         |    ^
2021-07-31T14:51:23.5068661Z   src/builtin.c:1645:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5069820Z    1645 |   {(cfunction_ptr)f_stderr, "stderr", 1},
2021-07-31T14:51:23.5070298Z         |    ^
2021-07-31T14:51:23.5071781Z   src/builtin.c:1646:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5073051Z    1646 |   {(cfunction_ptr)f_strptime, "strptime", 2},
2021-07-31T14:51:23.5073555Z         |    ^
2021-07-31T14:51:23.5075049Z   src/builtin.c:1647:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5076463Z    1647 |   {(cfunction_ptr)f_strftime, "strftime", 2},
2021-07-31T14:51:23.5076949Z         |    ^
2021-07-31T14:51:23.5078483Z   src/builtin.c:1648:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5079842Z    1648 |   {(cfunction_ptr)f_strflocaltime, "strflocaltime", 2},
2021-07-31T14:51:23.5080401Z         |    ^
2021-07-31T14:51:23.5081797Z   src/builtin.c:1649:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5082962Z    1649 |   {(cfunction_ptr)f_mktime, "mktime", 1},
2021-07-31T14:51:23.5083420Z         |    ^
2021-07-31T14:51:23.5084805Z   src/builtin.c:1650:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5085982Z    1650 |   {(cfunction_ptr)f_gmtime, "gmtime", 1},
2021-07-31T14:51:23.5086447Z         |    ^
2021-07-31T14:51:23.5087830Z   src/builtin.c:1651:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5089031Z    1651 |   {(cfunction_ptr)f_localtime, "localtime", 1},
2021-07-31T14:51:23.5089527Z         |    ^
2021-07-31T14:51:23.5090906Z   src/builtin.c:1652:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5092042Z    1652 |   {(cfunction_ptr)f_now, "now", 1},
2021-07-31T14:51:23.5092476Z         |    ^
2021-07-31T14:51:23.5093853Z   src/builtin.c:1653:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5095382Z    1653 |   {(cfunction_ptr)f_current_filename, "input_filename", 1},
2021-07-31T14:51:23.5095942Z         |    ^
2021-07-31T14:51:23.5097382Z   src/builtin.c:1654:4: warning: cast between incompatible function types from ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} to ‘void (*)()’ [-Wcast-function-type]
2021-07-31T14:51:23.5098620Z    1654 |   {(cfunction_ptr)f_current_line, "input_line_number", 1},
2021-07-31T14:51:23.5099140Z         |    ^
2021-07-31T14:51:23.5099559Z     CC       src/bytecode.lo
2021-07-31T14:51:23.5100027Z     CC       src/compile.lo
2021-07-31T14:51:23.5100507Z     CC       src/execute.lo
2021-07-31T14:51:23.5101243Z   src/execute.c: In function ‘jq_next’:
2021-07-31T14:51:23.5102873Z   src/execute.c:852:22: warning: cast between incompatible function types from ‘cfunction_ptr’ {aka ‘void (*)()’} to ‘jv (*)(jq_state *, jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>)’} [-Wcast-function-type]
2021-07-31T14:51:23.5104385Z     852 |       case 1: top = ((func_1)function->fptr)(jq, in[0]); break;
2021-07-31T14:51:23.5104926Z         |                      ^
2021-07-31T14:51:23.5106504Z   src/execute.c:853:22: warning: cast between incompatible function types from ‘cfunction_ptr’ {aka ‘void (*)()’} to ‘jv (*)(jq_state *, jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>)’} [-Wcast-function-type]
2021-07-31T14:51:23.5108112Z     853 |       case 2: top = ((func_2)function->fptr)(jq, in[0], in[1]); break;
2021-07-31T14:51:23.5108656Z         |                      ^
2021-07-31T14:51:23.5110366Z   src/execute.c:854:22: warning: cast between incompatible function types from ‘cfunction_ptr’ {aka ‘void (*)()’} to ‘jv (*)(jq_state *, jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} [-Wcast-function-type]
2021-07-31T14:51:23.5112231Z     854 |       case 3: top = ((func_3)function->fptr)(jq, in[0], in[1], in[2]); break;
2021-07-31T14:51:23.5112790Z         |                      ^
2021-07-31T14:51:23.5114606Z   src/execute.c:855:22: warning: cast between incompatible function types from ‘cfunction_ptr’ {aka ‘void (*)()’} to ‘jv (*)(jq_state *, jv,  jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} [-Wcast-function-type]
2021-07-31T14:51:23.5120836Z     855 |       case 4: top = ((func_4)function->fptr)(jq, in[0], in[1], in[2], in[3]); break;
2021-07-31T14:51:23.5121406Z         |                      ^
2021-07-31T14:51:23.5123564Z   src/execute.c:856:22: warning: cast between incompatible function types from ‘cfunction_ptr’ {aka ‘void (*)()’} to ‘jv (*)(jq_state *, jv,  jv,  jv,  jv,  jv)’ {aka ‘struct <anonymous> (*)(struct jq_state *, struct <anonymous>,  struct <anonymous>,  struct <anonymous>,  struct <anonymous>,  struct <anonymous>)’} [-Wcast-function-type]
2021-07-31T14:51:23.5125477Z     856 |       case 5: top = ((func_5)function->fptr)(jq, in[0], in[1], in[2], in[3], in[4]); break;
2021-07-31T14:51:23.5126046Z         |                      ^
2021-07-31T14:51:23.5127023Z   src/execute.c:566:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5128078Z     566 |         stack_save(jq, pc - 1, stack_get_pos(jq));
2021-07-31T14:51:23.5128609Z         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5129172Z   src/execute.c:567:5: note: here
2021-07-31T14:51:23.5129665Z     567 |     case STOREV: {
2021-07-31T14:51:23.5130066Z         |     ^~~~
2021-07-31T14:51:23.5131017Z   src/execute.c:713:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5131814Z     713 |     case EACH_OPT: {
2021-07-31T14:51:23.5132266Z         |                    ^
2021-07-31T14:51:23.5132719Z   src/execute.c:728:5: note: here
2021-07-31T14:51:23.5133297Z     728 |     case ON_BACKTRACK(EACH):
2021-07-31T14:51:23.5133884Z         |     ^~~~
2021-07-31T14:51:23.5134312Z     CC       src/jq_test.lo
2021-07-31T14:51:23.5134720Z     CC       src/jv.lo
2021-07-31T14:51:23.5135967Z   src/jv.c: In function ‘jvp_string_hash’:
2021-07-31T14:51:23.5137016Z   src/jv.c:585:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5137891Z     585 |   case 3: k1 ^= tail[2] << 16;
2021-07-31T14:51:23.5138313Z         |           ~~~^~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5138739Z   src/jv.c:586:3: note: here
2021-07-31T14:51:23.5139174Z     586 |   case 2: k1 ^= tail[1] << 8;
2021-07-31T14:51:23.5139578Z         |   ^~~~
2021-07-31T14:51:23.5140565Z   src/jv.c:586:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5141311Z     586 |   case 2: k1 ^= tail[1] << 8;
2021-07-31T14:51:23.5141733Z         |           ~~~^~~~~~~~~~~~~~~
2021-07-31T14:51:23.5142138Z   src/jv.c:587:3: note: here
2021-07-31T14:51:23.5142582Z     587 |   case 1: k1 ^= tail[0];
2021-07-31T14:51:23.5142977Z         |   ^~~~
2021-07-31T14:51:23.5143362Z     CC       src/jv_alloc.lo
2021-07-31T14:51:23.5143805Z     CC       src/jv_aux.lo
2021-07-31T14:51:23.5144222Z     CC       src/jv_dtoa.lo
2021-07-31T14:51:23.5144937Z   src/jv_dtoa.c: In function ‘jvp_strtod’:
2021-07-31T14:51:23.5145922Z   src/jv_dtoa.c:2330:54: warning: unused variable ‘test_scale’ [-Wunused-variable]
2021-07-31T14:51:23.5146739Z    2330 |  int bb2, bb5, bbe, bd2, bd5, bbbits, bs2, c, e, e1, test_scale;
2021-07-31T14:51:23.5147317Z         |                                                      ^~~~~~~~~~
2021-07-31T14:51:23.5148306Z   src/jv_dtoa.c:2368:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5149023Z    2368 |    sign = 1;
2021-07-31T14:51:23.5149561Z         |    ~~~~~^~~
2021-07-31T14:51:23.5149987Z   src/jv_dtoa.c:2370:3: note: here
2021-07-31T14:51:23.5150607Z    2370 |   case '+':
2021-07-31T14:51:23.5150981Z         |   ^~~~
2021-07-31T14:51:23.5151912Z   src/jv_dtoa.c:2480:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5152661Z    2480 |     esign = 1;
2021-07-31T14:51:23.5153049Z         |     ~~~~~~^~~
2021-07-31T14:51:23.5153460Z   src/jv_dtoa.c:2481:4: note: here
2021-07-31T14:51:23.5154062Z    2481 |    case '+':
2021-07-31T14:51:23.5154432Z         |    ^~~~
2021-07-31T14:51:23.5155121Z   src/jv_dtoa.c: In function ‘jvp_dtoa’:
2021-07-31T14:51:23.5156168Z   src/jv_dtoa.c:3700:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5156921Z    3700 |    leftright = 0;
2021-07-31T14:51:23.5157395Z         |    ~~~~~~~~~~^~~
2021-07-31T14:51:23.5157825Z   src/jv_dtoa.c:3702:3: note: here
2021-07-31T14:51:23.5158243Z    3702 |   case 4:
2021-07-31T14:51:23.5158681Z         |   ^~~~
2021-07-31T14:51:23.5159653Z   src/jv_dtoa.c:3708:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
2021-07-31T14:51:23.5160404Z    3708 |    leftright = 0;
2021-07-31T14:51:23.5160813Z         |    ~~~~~~~~~~^~~
2021-07-31T14:51:23.5161235Z   src/jv_dtoa.c:3710:3: note: here
2021-07-31T14:51:23.5161668Z    3710 |   case 5:
2021-07-31T14:51:23.5162029Z         |   ^~~~
2021-07-31T14:51:23.5162412Z     CC       src/jv_file.lo
2021-07-31T14:51:23.5162867Z     CC       src/jv_parse.lo
2021-07-31T14:51:23.5163312Z     CC       src/jv_print.lo
2021-07-31T14:51:23.5163786Z     CC       src/jv_unicode.lo
2021-07-31T14:51:23.5164256Z     CC       src/linker.lo
2021-07-31T14:51:23.5164700Z     CC       src/locfile.lo
2021-07-31T14:51:23.5165149Z     CC       src/util.lo
2021-07-31T14:51:23.5165584Z     CC       src/lexer.lo
2021-07-31T14:51:23.5166327Z   src/lexer.c: In function ‘yy_get_next_buffer’:
2021-07-31T14:51:23.5167679Z   src/lexer.c:1500:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘yy_size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2021-07-31T14:51:23.5169095Z    1500 |  if ((int) (yyg->yy_n_chars + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) {
2021-07-31T14:51:23.5169853Z         |                                               ^
2021-07-31T14:51:23.5170320Z     CC       src/parser.lo
2021-07-31T14:51:23.5170770Z     CCLD     libjq.la
2021-07-31T14:51:23.5171554Z   ar: `u' modifier ignored since `D' is the default (see `U')
2021-07-31T14:51:23.5172140Z     GEN      src/version.h
2021-07-31T14:51:23.5172561Z     CC       src/main.o
2021-07-31T14:51:23.5172954Z     CCLD     jq
2021-07-31T14:51:23.5173336Z     GEN      jq.1
2021-07-31T14:51:23.5174424Z   make[2]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/jq-1.6'
2021-07-31T14:51:23.5176155Z   make[1]: Leaving directory '/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/jq-1.6'
2021-07-31T14:51:23.5177633Z   Downloading https://github.com/kkos/oniguruma/releases/download/v6.9.4/onig-6.9.4.tar.gz
2021-07-31T14:51:23.5178983Z   Downloaded https://github.com/kkos/oniguruma/releases/download/v6.9.4/onig-6.9.4.tar.gz
2021-07-31T14:51:23.5180643Z   Executing: ./configure CFLAGS=-fPIC --prefix=/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4
2021-07-31T14:51:23.5181676Z   Executing: make
2021-07-31T14:51:23.5182139Z   Executing: make install
2021-07-31T14:51:23.5183160Z   Downloading https://github.com/stedolan/jq/releases/download/jq-1.6/jq-1.6.tar.gz
2021-07-31T14:51:23.5184420Z   Downloaded https://github.com/stedolan/jq/releases/download/jq-1.6/jq-1.6.tar.gz
2021-07-31T14:51:23.5186369Z   Executing: ./configure CFLAGS=-fPIC -pthread --disable-maintainer-mode --with-oniguruma=/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/onig-install-6.9.4
2021-07-31T14:51:23.5187691Z   Executing: make
2021-07-31T14:51:23.5188313Z   building 'jq' extension
2021-07-31T14:51:23.5188933Z   creating build
2021-07-31T14:51:23.5189684Z   creating build/temp.linux-x86_64-3.10
2021-07-31T14:51:23.5191756Z   gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tmp/pip-install-kg4lzr69/jq_55b57b6acf0943d2a999e6d55b37c7f7/_deps/jq-1.6/src -I/opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10 -c jq.c -o build/temp.linux-x86_64-3.10/jq.o
2021-07-31T14:51:23.5193582Z   jq.c: In function ‘__pyx_f_2jq__jv_to_python’:
2021-07-31T14:51:23.5194783Z   jq.c:2033:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-31T14:51:23.5195729Z    2033 |     __pyx_t_3 = jv_string_value(__pyx_v_value);
2021-07-31T14:51:23.5196193Z         |               ^
2021-07-31T14:51:23.5197271Z   jq.c:2182:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-31T14:51:23.5198248Z    2182 |         __pyx_t_3 = jv_string_value(__pyx_v_property_key);
2021-07-31T14:51:23.5198765Z         |                   ^
2021-07-31T14:51:23.5199594Z   jq.c: In function ‘__pyx_f_2jq__store_error’:
2021-07-31T14:51:23.5200733Z   jq.c:3034:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-31T14:51:23.5201832Z    3034 |     __pyx_t_3 = jv_string_value(__pyx_v_error);
2021-07-31T14:51:23.5202307Z         |               ^
2021-07-31T14:51:23.5203059Z   jq.c: In function ‘__pyx_pf_2jq_15_ResultIterator_6__next__’:
2021-07-31T14:51:23.5204315Z   jq.c:6257:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-31T14:51:23.5205292Z    6257 |       __pyx_t_3 = jv_string_value(__pyx_v_error_message);
2021-07-31T14:51:23.5205789Z         |                 ^
2021-07-31T14:51:23.5206591Z   jq.c: In function ‘__pyx_f_2jq_15_ResultIterator__ready_next_input’:
2021-07-31T14:51:23.5208691Z   jq.c:6441:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-31T14:51:23.5209767Z    6441 |     __pyx_t_2 = jv_string_value(__pyx_v_error_message);
2021-07-31T14:51:23.5210277Z         |               ^
2021-07-31T14:51:23.5211122Z   jq.c: In function ‘__pyx_tp_dealloc_2jq__JqStatePool’:
2021-07-31T14:51:23.5212154Z   jq.c:7601:5: error: lvalue required as increment operand
2021-07-31T14:51:23.5212923Z    7601 |     ++Py_REFCNT(o);
2021-07-31T14:51:23.5213299Z         |     ^~
2021-07-31T14:51:23.5213848Z   jq.c:7603:5: error: lvalue required as decrement operand
2021-07-31T14:51:23.5214644Z    7603 |     --Py_REFCNT(o);
2021-07-31T14:51:23.5215300Z         |     ^~
2021-07-31T14:51:23.5216833Z   jq.c: In function ‘__pyx_tp_dealloc_2jq__ResultIterator’:
2021-07-31T14:51:23.5220190Z   jq.c:8027:5: error: lvalue required as increment operand
2021-07-31T14:51:23.5220800Z    8027 |     ++Py_REFCNT(o);
2021-07-31T14:51:23.5221193Z         |     ^~
2021-07-31T14:51:23.5221724Z   jq.c:8029:5: error: lvalue required as decrement operand
2021-07-31T14:51:23.5222627Z    8029 |     --Py_REFCNT(o);
2021-07-31T14:51:23.5223030Z         |     ^~
2021-07-31T14:51:23.5224161Z   jq.c: In function ‘__Pyx_decode_c_string’:
2021-07-31T14:51:23.5225505Z   jq.c:9665:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5226480Z    9665 |         return PyUnicode_FromUnicode(NULL, 0);
2021-07-31T14:51:23.5226984Z         |         ^~~~~~
2021-07-31T14:51:23.5228045Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5229409Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5230112Z                    from jq.c:4:
2021-07-31T14:51:23.5231223Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:551:42: note: declared here
2021-07-31T14:51:23.5232299Z     551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
2021-07-31T14:51:23.5233183Z         |                                          ^~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5234056Z   jq.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-31T14:51:23.5235317Z   jq.c:10260:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5236333Z   10260 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5236908Z         |                     ^
2021-07-31T14:51:23.5237958Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5239307Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5240028Z                    from jq.c:4:
2021-07-31T14:51:23.5241120Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5242193Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5242842Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5243875Z   jq.c:10260:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5244880Z   10260 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5245446Z         |                     ^
2021-07-31T14:51:23.5246485Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5247825Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5248538Z                    from jq.c:4:
2021-07-31T14:51:23.5249633Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
2021-07-31T14:51:23.5250704Z     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-31T14:51:23.5251366Z         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5252418Z   jq.c:10260:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5253533Z   10260 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5254124Z         |                     ^
2021-07-31T14:51:23.5255405Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5256809Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5257524Z                    from jq.c:4:
2021-07-31T14:51:23.5258612Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5259675Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5260308Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5261371Z   jq.c:10260:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5262377Z   10260 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5262933Z         |                     ^
2021-07-31T14:51:23.5263993Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5265338Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5266034Z                    from jq.c:4:
2021-07-31T14:51:23.5267138Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5268202Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5268817Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5270031Z   jq.c:10260:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5271021Z   10260 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5271585Z         |                     ^
2021-07-31T14:51:23.5272640Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5273978Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5274677Z                    from jq.c:4:
2021-07-31T14:51:23.5275783Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
2021-07-31T14:51:23.5276848Z     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-31T14:51:23.5277487Z         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5278903Z   jq.c:10260:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5279835Z   10260 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5280360Z         |                     ^
2021-07-31T14:51:23.5281348Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5282801Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5283681Z                    from jq.c:4:
2021-07-31T14:51:23.5284786Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5285859Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5286479Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5287685Z   jq.c:10276:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5288798Z   10276 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5289345Z         |                         ^
2021-07-31T14:51:23.5290440Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5291732Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5292583Z                    from jq.c:4:
2021-07-31T14:51:23.5293866Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5295291Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5295952Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5297046Z   jq.c:10276:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5298059Z   10276 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5298645Z         |                         ^
2021-07-31T14:51:23.5299718Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5302378Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5303454Z                    from jq.c:4:
2021-07-31T14:51:23.5304619Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
2021-07-31T14:51:23.5305679Z     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-31T14:51:23.5307065Z         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5308283Z   jq.c:10276:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5309503Z   10276 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5310094Z         |                         ^
2021-07-31T14:51:23.5311217Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5312842Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5313743Z                    from jq.c:4:
2021-07-31T14:51:23.5314853Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5315909Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5316549Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5326271Z   jq.c:10276:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5327429Z   10276 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5328024Z         |                         ^
2021-07-31T14:51:23.5329201Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5330742Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5331457Z                    from jq.c:4:
2021-07-31T14:51:23.5332550Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5333618Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5334375Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5335655Z   jq.c:10276:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5337099Z   10276 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5337729Z         |                         ^
2021-07-31T14:51:23.5339136Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5340567Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5341288Z                    from jq.c:4:
2021-07-31T14:51:23.5342379Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here
2021-07-31T14:51:23.5343459Z     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-31T14:51:23.5344113Z         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5345176Z   jq.c:10276:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-31T14:51:23.5346202Z   10276 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-31T14:51:23.5346802Z         |                         ^
2021-07-31T14:51:23.5347858Z   In file included from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/unicodeobject.h:1046,
2021-07-31T14:51:23.5349212Z                    from /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/Python.h:96,
2021-07-31T14:51:23.5349921Z                    from jq.c:4:
2021-07-31T14:51:23.5351013Z   /opt/hostedtoolcache/Python/3.10.0-beta.4/x64/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here
2021-07-31T14:51:23.5352088Z     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-31T14:51:23.5352725Z         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-31T14:51:23.5353417Z   jq.c: In function ‘__Pyx_Coroutine_Send’:
2021-07-31T14:51:23.5354769Z   jq.c:12085:19: warning: implicit declaration of function ‘_PyGen_Send’; did you mean ‘_PyGen_yf’? [-Wimplicit-function-declaration]
2021-07-31T14:51:23.5356137Z   12085 |             ret = _PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value);
2021-07-31T14:51:23.5356729Z         |                   ^~~~~~~~~~~
2021-07-31T14:51:23.5357157Z         |                   _PyGen_yf
2021-07-31T14:51:23.5358426Z   jq.c:12085:17: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2021-07-31T14:51:23.5359534Z   12085 |             ret = _PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value);
2021-07-31T14:51:23.5360149Z         |                 ^
2021-07-31T14:51:23.5361302Z   jq.c:12090:17: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2021-07-31T14:51:23.5362381Z   12090 |             ret = _PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value);
2021-07-31T14:51:23.5362979Z         |                 ^
2021-07-31T14:51:23.5363674Z   jq.c: In function ‘__Pyx_Generator_Next’:
2021-07-31T14:51:23.5364917Z   jq.c:12174:17: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2021-07-31T14:51:23.5366044Z   12174 |             ret = _PyGen_Send((PyGenObject*)yf, NULL);
2021-07-31T14:51:23.5366572Z         |                 ^
2021-07-31T14:51:23.5367324Z   error: command '/usr/bin/gcc' failed with exit code 1
2021-07-31T14:51:23.5368092Z   ----------------------------------------
2021-07-31T14:51:23.5368639Z   ERROR: Failed building wheel for jq

Slurp functionality

In the jq manual, it describes a way to run the filter on the entire string at once instead each JSON object. Is this functionality present in this?

>32 bit numbers come across as floats.

import jq
jq.compile(".").input({"foo": 2147483647}).first()
{'foo': 2147483647}
jq.compile(".").input({"foo": 2147483648}).first()
{'foo': 2147483648.0}

Is it possible to do cross-compilation to build windows wheels?

According to jq's wiki, https://github.com/stedolan/jq/wiki/Cross-compilation , you may be able to build wheels for Windows from Linux. I would like to help but have no idea about how you are currently building wheels? Should I make a PR to change the setup.py or write a CI (continuous integration, github actions would be good) script?

/bin/sh: Syntax error: redirection unexpected (expecting word)

$ uname -a
FreeBSD microbox 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 #0 r306420: Thu Sep 29 01:43:23 UTC 2016     [email protected]:/usr/obj/usr/src/sys/GENERIC  amd64

$ jq --version
jq-1.5-1-g940132e-dirty

$ gcc --version
gcc (FreeBSD Ports Collection) 4.8.5
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

$ sudo pkg install autoconf automake libtool
Updating FreeBSD repository catalogue...
FreeBSD repository is up-to-date.
All repositories are up-to-date.
The following 6 package(s) will be affected (of 0 checked):

New packages to be INSTALLED:
	autoconf: 2.69_1
	automake: 1.15_1
	libtool: 2.4.6
	autoconf-wrapper: 20131203
	m4: 1.4.17_1,1
	automake-wrapper: 20131203

Number of packages to be installed: 6

The process will require 8 MiB more space.
1 MiB to be downloaded.

Proceed with this action? [y/N]: y
Fetching autoconf-2.69_1.txz: 100%  527 KiB 540.1kB/s    00:01
Fetching automake-1.15_1.txz: 100%  429 KiB 439.2kB/s    00:01
Fetching libtool-2.4.6.txz: 100%  356 KiB 365.0kB/s    00:01
Fetching autoconf-wrapper-20131203.txz: 100%    2 KiB   2.2kB/s    00:01
Fetching m4-1.4.17_1,1.txz: 100%  200 KiB 205.0kB/s    00:01
Fetching automake-wrapper-20131203.txz: 100%    2 KiB   2.1kB/s    00:01
Checking integrity... done (0 conflicting)
[1/6] Installing autoconf-wrapper-20131203...
[1/6] Extracting autoconf-wrapper-20131203: 100%
[2/6] Installing m4-1.4.17_1,1...
[2/6] Extracting m4-1.4.17_1,1: 100%
[3/6] Installing autoconf-2.69_1...
[3/6] Extracting autoconf-2.69_1: 100%
[4/6] Installing automake-wrapper-20131203...
[4/6] Extracting automake-wrapper-20131203: 100%
[5/6] Installing automake-1.15_1...
[5/6] Extracting automake-1.15_1: 100%
[6/6] Installing libtool-2.4.6...
[6/6] Extracting libtool-2.4.6: 100%

$ sudo pip install jq
Collecting jq
  Using cached jq-0.1.6.tar.gz
Building wheels for collected packages: jq
  Running setup.py bdist_wheel for jq ... error
  Complete output from command /usr/local/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-l9_T4z/jq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpSiodnkpip-wheel- --python-tag cp27:
  running bdist_wheel
  running build
  running build_ext
  Executing: ./configure CFLAGS=-fPIC --prefix=/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6
  checking for a BSD-compatible install... /usr/bin/install -c
  checking whether build environment is sane... yes
  checking for a thread-safe mkdir -p... ./install-sh -c -d
  checking for gawk... no
  checking for mawk... no
  checking for nawk... nawk
  checking whether make sets $(MAKE)... yes
  checking for gcc... gcc
  checking whether the C compiler works... yes
  checking for C compiler default output file name... a.out
  checking for suffix of executables...
  checking whether we are cross compiling... no
  checking for suffix of object files... o
  checking whether we are using the GNU C compiler... yes
  checking whether gcc accepts -g... yes
  checking for gcc option to accept ISO C89... none needed
  checking for style of include used by make... GNU
  checking dependency style of gcc... gcc3
  checking build system type... x86_64-unknown-freebsd11.0
  checking host system type... x86_64-unknown-freebsd11.0
  checking how to print strings... printf
  checking for a sed that does not truncate output... /usr/bin/sed
  checking for grep that handles long lines and -e... /usr/bin/grep
  checking for egrep... /usr/bin/grep -E
  checking for fgrep... /usr/bin/grep -F
  checking for ld used by gcc... /usr/local/bin/ld
  checking if the linker (/usr/local/bin/ld) is GNU ld... yes
  checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm -B
  checking the name lister (/usr/local/bin/nm -B) interface... BSD nm
  checking whether ln -s works... yes
  checking the maximum length of command line arguments... 196608
  checking whether the shell understands some XSI constructs... yes
  checking whether the shell understands "+="... no
  checking how to convert x86_64-unknown-freebsd11.0 file names to x86_64-unknown-freebsd11.0 format... func_convert_file_noop
  checking how to convert x86_64-unknown-freebsd11.0 file names to toolchain format... func_convert_file_noop
  checking for /usr/local/bin/ld option to reload object files... -r
  checking for objdump... objdump
  checking how to recognize dependent libraries... pass_all
  checking for dlltool... no
  checking how to associate runtime and link libraries... printf %s\n
  checking for ar... ar
  checking for archiver @FILE support... no
  checking for strip... strip
  checking for ranlib... ranlib
  checking command to parse /usr/local/bin/nm -B output from gcc object... ok
  checking for sysroot... no
  checking for mt... mt
  checking if mt is a manifest tool... no
  checking how to run the C preprocessor... gcc -E
  checking for ANSI C header files... yes
  checking for sys/types.h... yes
  checking for sys/stat.h... yes
  checking for stdlib.h... yes
  checking for string.h... yes
  checking for memory.h... yes
  checking for strings.h... yes
  checking for inttypes.h... yes
  checking for stdint.h... yes
  checking for unistd.h... yes
  checking for dlfcn.h... yes
  checking for objdir... .libs
  checking if gcc supports -fno-rtti -fno-exceptions... no
  checking for gcc option to produce PIC... -fPIC -DPIC
  checking if gcc PIC flag -fPIC -DPIC works... yes
  checking if gcc static flag -static works... yes
  checking if gcc supports -c -o file.o... yes
  checking if gcc supports -c -o file.o... (cached) yes
  checking whether the gcc linker (/usr/local/bin/ld) supports shared libraries... yes
  checking whether -lc should be explicitly linked in... no
  checking dynamic linker characteristics... freebsd11.0 ld.so
  checking how to hardcode library paths into programs... immediate
  checking whether stripping libraries is possible... no
  checking if libtool supports shared libraries... yes
  checking whether to build shared libraries... yes
  checking whether to build static libraries... yes
  checking whether make sets $(MAKE)... (cached) yes
  checking for ANSI C header files... (cached) yes
  checking for stdlib.h... (cached) yes
  checking for string.h... (cached) yes
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  checking sys/time.h usability... yes
  checking sys/time.h presence... yes
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  checking for sys/times.h... yes
  checking size of int... 4
  checking size of short... 2
  checking size of long... 8
  checking for an ANSI C-conforming const... yes
  checking whether time.h and sys/time.h may both be included... yes
  checking for size_t... yes
  checking for working alloca.h... no
  checking for alloca... yes
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  configure: creating ./config.status
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  Executing: make
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  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT sjis.lo -MD -MP -MF .deps/sjis.Tpo -c ./enc/sjis.c -o sjis.o >/dev/null 2>&1
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  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_1.lo -MD -MP -MF .deps/iso8859_1.Tpo -c -o iso8859_1.lo `test -f './enc/iso8859_1.c' || echo './'`./enc/iso8859_1.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_1.lo -MD -MP -MF .deps/iso8859_1.Tpo -c ./enc/iso8859_1.c  -fPIC -DPIC -o .libs/iso8859_1.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_1.lo -MD -MP -MF .deps/iso8859_1.Tpo -c ./enc/iso8859_1.c -o iso8859_1.o >/dev/null 2>&1
  mv -f .deps/iso8859_1.Tpo .deps/iso8859_1.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_2.lo -MD -MP -MF .deps/iso8859_2.Tpo -c -o iso8859_2.lo `test -f './enc/iso8859_2.c' || echo './'`./enc/iso8859_2.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_2.lo -MD -MP -MF .deps/iso8859_2.Tpo -c ./enc/iso8859_2.c  -fPIC -DPIC -o .libs/iso8859_2.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_2.lo -MD -MP -MF .deps/iso8859_2.Tpo -c ./enc/iso8859_2.c -o iso8859_2.o >/dev/null 2>&1
  mv -f .deps/iso8859_2.Tpo .deps/iso8859_2.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_3.lo -MD -MP -MF .deps/iso8859_3.Tpo -c -o iso8859_3.lo `test -f './enc/iso8859_3.c' || echo './'`./enc/iso8859_3.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_3.lo -MD -MP -MF .deps/iso8859_3.Tpo -c ./enc/iso8859_3.c  -fPIC -DPIC -o .libs/iso8859_3.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_3.lo -MD -MP -MF .deps/iso8859_3.Tpo -c ./enc/iso8859_3.c -o iso8859_3.o >/dev/null 2>&1
  mv -f .deps/iso8859_3.Tpo .deps/iso8859_3.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_4.lo -MD -MP -MF .deps/iso8859_4.Tpo -c -o iso8859_4.lo `test -f './enc/iso8859_4.c' || echo './'`./enc/iso8859_4.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_4.lo -MD -MP -MF .deps/iso8859_4.Tpo -c ./enc/iso8859_4.c  -fPIC -DPIC -o .libs/iso8859_4.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_4.lo -MD -MP -MF .deps/iso8859_4.Tpo -c ./enc/iso8859_4.c -o iso8859_4.o >/dev/null 2>&1
  mv -f .deps/iso8859_4.Tpo .deps/iso8859_4.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_5.lo -MD -MP -MF .deps/iso8859_5.Tpo -c -o iso8859_5.lo `test -f './enc/iso8859_5.c' || echo './'`./enc/iso8859_5.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_5.lo -MD -MP -MF .deps/iso8859_5.Tpo -c ./enc/iso8859_5.c  -fPIC -DPIC -o .libs/iso8859_5.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_5.lo -MD -MP -MF .deps/iso8859_5.Tpo -c ./enc/iso8859_5.c -o iso8859_5.o >/dev/null 2>&1
  mv -f .deps/iso8859_5.Tpo .deps/iso8859_5.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_6.lo -MD -MP -MF .deps/iso8859_6.Tpo -c -o iso8859_6.lo `test -f './enc/iso8859_6.c' || echo './'`./enc/iso8859_6.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_6.lo -MD -MP -MF .deps/iso8859_6.Tpo -c ./enc/iso8859_6.c  -fPIC -DPIC -o .libs/iso8859_6.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_6.lo -MD -MP -MF .deps/iso8859_6.Tpo -c ./enc/iso8859_6.c -o iso8859_6.o >/dev/null 2>&1
  mv -f .deps/iso8859_6.Tpo .deps/iso8859_6.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_7.lo -MD -MP -MF .deps/iso8859_7.Tpo -c -o iso8859_7.lo `test -f './enc/iso8859_7.c' || echo './'`./enc/iso8859_7.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_7.lo -MD -MP -MF .deps/iso8859_7.Tpo -c ./enc/iso8859_7.c  -fPIC -DPIC -o .libs/iso8859_7.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_7.lo -MD -MP -MF .deps/iso8859_7.Tpo -c ./enc/iso8859_7.c -o iso8859_7.o >/dev/null 2>&1
  mv -f .deps/iso8859_7.Tpo .deps/iso8859_7.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_8.lo -MD -MP -MF .deps/iso8859_8.Tpo -c -o iso8859_8.lo `test -f './enc/iso8859_8.c' || echo './'`./enc/iso8859_8.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_8.lo -MD -MP -MF .deps/iso8859_8.Tpo -c ./enc/iso8859_8.c  -fPIC -DPIC -o .libs/iso8859_8.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_8.lo -MD -MP -MF .deps/iso8859_8.Tpo -c ./enc/iso8859_8.c -o iso8859_8.o >/dev/null 2>&1
  mv -f .deps/iso8859_8.Tpo .deps/iso8859_8.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_9.lo -MD -MP -MF .deps/iso8859_9.Tpo -c -o iso8859_9.lo `test -f './enc/iso8859_9.c' || echo './'`./enc/iso8859_9.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_9.lo -MD -MP -MF .deps/iso8859_9.Tpo -c ./enc/iso8859_9.c  -fPIC -DPIC -o .libs/iso8859_9.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_9.lo -MD -MP -MF .deps/iso8859_9.Tpo -c ./enc/iso8859_9.c -o iso8859_9.o >/dev/null 2>&1
  mv -f .deps/iso8859_9.Tpo .deps/iso8859_9.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_10.lo -MD -MP -MF .deps/iso8859_10.Tpo -c -o iso8859_10.lo `test -f './enc/iso8859_10.c' || echo './'`./enc/iso8859_10.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_10.lo -MD -MP -MF .deps/iso8859_10.Tpo -c ./enc/iso8859_10.c  -fPIC -DPIC -o .libs/iso8859_10.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_10.lo -MD -MP -MF .deps/iso8859_10.Tpo -c ./enc/iso8859_10.c -o iso8859_10.o >/dev/null 2>&1
  mv -f .deps/iso8859_10.Tpo .deps/iso8859_10.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_11.lo -MD -MP -MF .deps/iso8859_11.Tpo -c -o iso8859_11.lo `test -f './enc/iso8859_11.c' || echo './'`./enc/iso8859_11.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_11.lo -MD -MP -MF .deps/iso8859_11.Tpo -c ./enc/iso8859_11.c  -fPIC -DPIC -o .libs/iso8859_11.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_11.lo -MD -MP -MF .deps/iso8859_11.Tpo -c ./enc/iso8859_11.c -o iso8859_11.o >/dev/null 2>&1
  mv -f .deps/iso8859_11.Tpo .deps/iso8859_11.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_13.lo -MD -MP -MF .deps/iso8859_13.Tpo -c -o iso8859_13.lo `test -f './enc/iso8859_13.c' || echo './'`./enc/iso8859_13.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_13.lo -MD -MP -MF .deps/iso8859_13.Tpo -c ./enc/iso8859_13.c  -fPIC -DPIC -o .libs/iso8859_13.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_13.lo -MD -MP -MF .deps/iso8859_13.Tpo -c ./enc/iso8859_13.c -o iso8859_13.o >/dev/null 2>&1
  mv -f .deps/iso8859_13.Tpo .deps/iso8859_13.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_14.lo -MD -MP -MF .deps/iso8859_14.Tpo -c -o iso8859_14.lo `test -f './enc/iso8859_14.c' || echo './'`./enc/iso8859_14.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_14.lo -MD -MP -MF .deps/iso8859_14.Tpo -c ./enc/iso8859_14.c  -fPIC -DPIC -o .libs/iso8859_14.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_14.lo -MD -MP -MF .deps/iso8859_14.Tpo -c ./enc/iso8859_14.c -o iso8859_14.o >/dev/null 2>&1
  mv -f .deps/iso8859_14.Tpo .deps/iso8859_14.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c -o iso8859_15.lo `test -f './enc/iso8859_15.c' || echo './'`./enc/iso8859_15.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c ./enc/iso8859_15.c  -fPIC -DPIC -o .libs/iso8859_15.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c ./enc/iso8859_15.c -o iso8859_15.o >/dev/null 2>&1
  mv -f .deps/iso8859_15.Tpo .deps/iso8859_15.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c -o iso8859_16.lo `test -f './enc/iso8859_16.c' || echo './'`./enc/iso8859_16.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c ./enc/iso8859_16.c  -fPIC -DPIC -o .libs/iso8859_16.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c ./enc/iso8859_16.c -o iso8859_16.o >/dev/null 2>&1
  mv -f .deps/iso8859_16.Tpo .deps/iso8859_16.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c -o euc_tw.lo `test -f './enc/euc_tw.c' || echo './'`./enc/euc_tw.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c ./enc/euc_tw.c  -fPIC -DPIC -o .libs/euc_tw.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c ./enc/euc_tw.c -o euc_tw.o >/dev/null 2>&1
  mv -f .deps/euc_tw.Tpo .deps/euc_tw.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c -o euc_kr.lo `test -f './enc/euc_kr.c' || echo './'`./enc/euc_kr.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c ./enc/euc_kr.c  -fPIC -DPIC -o .libs/euc_kr.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c ./enc/euc_kr.c -o euc_kr.o >/dev/null 2>&1
  mv -f .deps/euc_kr.Tpo .deps/euc_kr.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c -o big5.lo `test -f './enc/big5.c' || echo './'`./enc/big5.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c ./enc/big5.c  -fPIC -DPIC -o .libs/big5.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c ./enc/big5.c -o big5.o >/dev/null 2>&1
  mv -f .deps/big5.Tpo .deps/big5.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c -o gb18030.lo `test -f './enc/gb18030.c' || echo './'`./enc/gb18030.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c ./enc/gb18030.c  -fPIC -DPIC -o .libs/gb18030.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c ./enc/gb18030.c -o gb18030.o >/dev/null 2>&1
  mv -f .deps/gb18030.Tpo .deps/gb18030.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c -o koi8_r.lo `test -f './enc/koi8_r.c' || echo './'`./enc/koi8_r.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c ./enc/koi8_r.c  -fPIC -DPIC -o .libs/koi8_r.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c ./enc/koi8_r.c -o koi8_r.o >/dev/null 2>&1
  mv -f .deps/koi8_r.Tpo .deps/koi8_r.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include    -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c -o cp1251.lo `test -f './enc/cp1251.c' || echo './'`./enc/cp1251.c
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c ./enc/cp1251.c  -fPIC -DPIC -o .libs/cp1251.o
  libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c ./enc/cp1251.c -o cp1251.o >/dev/null 2>&1
  mv -f .deps/cp1251.Tpo .deps/cp1251.Plo
  /bin/sh ./libtool --tag=CC    --mode=link gcc  -fPIC  -version-info 2:0:0  -o libonig.la -rpath /tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/lib regerror.lo regparse.lo regext.lo regcomp.lo  regexec.lo reggnu.lo regenc.lo regsyntax.lo regtrav.lo  regversion.lo st.lo regposix.lo regposerr.lo unicode.lo  ascii.lo utf8.lo utf16_be.lo utf16_le.lo utf32_be.lo  utf32_le.lo euc_jp.lo sjis.lo iso8859_1.lo iso8859_2.lo  iso8859_3.lo iso8859_4.lo iso8859_5.lo iso8859_6.lo  iso8859_7.lo iso8859_8.lo iso8859_9.lo iso8859_10.lo  iso8859_11.lo iso8859_13.lo iso8859_14.lo iso8859_15.lo  iso8859_16.lo euc_tw.lo euc_kr.lo big5.lo gb18030.lo koi8_r.lo  cp1251.lo
  libtool: link: gcc -shared  -fPIC -DPIC  .libs/regerror.o .libs/regparse.o .libs/regext.o .libs/regcomp.o .libs/regexec.o .libs/reggnu.o .libs/regenc.o .libs/regsyntax.o .libs/regtrav.o .libs/regversion.o .libs/st.o .libs/regposix.o .libs/regposerr.o .libs/unicode.o .libs/ascii.o .libs/utf8.o .libs/utf16_be.o .libs/utf16_le.o .libs/utf32_be.o .libs/utf32_le.o .libs/euc_jp.o .libs/sjis.o .libs/iso8859_1.o .libs/iso8859_2.o .libs/iso8859_3.o .libs/iso8859_4.o .libs/iso8859_5.o .libs/iso8859_6.o .libs/iso8859_7.o .libs/iso8859_8.o .libs/iso8859_9.o .libs/iso8859_10.o .libs/iso8859_11.o .libs/iso8859_13.o .libs/iso8859_14.o .libs/iso8859_15.o .libs/iso8859_16.o .libs/euc_tw.o .libs/euc_kr.o .libs/big5.o .libs/gb18030.o .libs/koi8_r.o .libs/cp1251.o      -Wl,-soname -Wl,libonig.so.2 -o .libs/libonig.so.2
  libtool: link: (cd ".libs" && rm -f "libonig.so" && ln -s "libonig.so.2" "libonig.so")
  libtool: link: (cd ".libs" && rm -f "libonig.so" && ln -s "libonig.so.2" "libonig.so")
  libtool: link: ar cru .libs/libonig.a  regerror.o regparse.o regext.o regcomp.o regexec.o reggnu.o regenc.o regsyntax.o regtrav.o regversion.o st.o regposix.o regposerr.o unicode.o ascii.o utf8.o utf16_be.o utf16_le.o utf32_be.o utf32_le.o euc_jp.o sjis.o iso8859_1.o iso8859_2.o iso8859_3.o iso8859_4.o iso8859_5.o iso8859_6.o iso8859_7.o iso8859_8.o iso8859_9.o iso8859_10.o iso8859_11.o iso8859_13.o iso8859_14.o iso8859_15.o iso8859_16.o euc_tw.o euc_kr.o big5.o gb18030.o koi8_r.o cp1251.o
  libtool: link: ranlib .libs/libonig.a
  libtool: link: ( cd ".libs" && rm -f "libonig.la" && ln -s "../libonig.la" "libonig.la" )
  sed                                           -e 's,[@]datadir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/share,g'                  -e 's,[@]datarootdir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/share,g'          -e 's,[@]PACKAGE_VERSION[@],5.9.6,g'  -e 's,[@]prefix[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6,g'                    -e 's,[@]exec_prefix[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6,g'          -e 's,[@]libdir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/lib,g'                    -e 's,[@]includedir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include,g' <  > oniguruma.pc
  /bin/sh: Syntax error: redirection unexpected (expecting word)
  *** Error code 2

  Stop.
  make[2]: stopped in /tmp/pip-build-l9_T4z/jq/onig-5.9.6
  *** Error code 1

  Stop.
  make[1]: stopped in /tmp/pip-build-l9_T4z/jq/onig-5.9.6
  *** Error code 1

  Stop.
  make: stopped in /tmp/pip-build-l9_T4z/jq/onig-5.9.6
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-build-l9_T4z/jq/setup.py", line 123, in <module>
      'Programming Language :: Python :: 3.5',
    File "/usr/local/lib/python2.7/distutils/core.py", line 151, in setup
      dist.run_commands()
    File "/usr/local/lib/python2.7/distutils/dist.py", line 953, in run_commands
      self.run_command(cmd)
    File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/usr/local/lib/python2.7/site-packages/wheel/bdist_wheel.py", line 179, in run
      self.run_command('build')
    File "/usr/local/lib/python2.7/distutils/cmd.py", line 326, in run_command
      self.distribution.run_command(command)
    File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/usr/local/lib/python2.7/distutils/command/build.py", line 127, in run
      self.run_command(cmd_name)
    File "/usr/local/lib/python2.7/distutils/cmd.py", line 326, in run_command
      self.distribution.run_command(command)
    File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/tmp/pip-build-l9_T4z/jq/setup.py", line 40, in run
      self._build_oniguruma()
    File "/tmp/pip-build-l9_T4z/jq/setup.py", line 52, in _build_oniguruma
      ["make", "install"],
    File "/tmp/pip-build-l9_T4z/jq/setup.py", line 79, in _build_lib
      run_command(command)
    File "/tmp/pip-build-l9_T4z/jq/setup.py", line 76, in run_command
      subprocess.check_call(args, cwd=lib_dir)
    File "/usr/local/lib/python2.7/subprocess.py", line 541, in check_call
      raise CalledProcessError(retcode, cmd)
  subprocess.CalledProcessError: Command '['make']' returned non-zero exit status 1

  ----------------------------------------
  Failed building wheel for jq
  Running setup.py clean for jq
Failed to build jq
Installing collected packages: jq
  Running setup.py install for jq ... error
    Complete output from command /usr/local/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-l9_T4z/jq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-JtEC3x-record/install-record.txt --single-version-externally-managed --compile:
    running install
    running build
    running build_ext
    Executing: ./configure CFLAGS=-fPIC --prefix=/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6
    checking for a BSD-compatible install... /usr/bin/install -c
    checking whether build environment is sane... yes
    checking for a thread-safe mkdir -p... ./install-sh -c -d
    checking for gawk... no
    checking for mawk... no
    checking for nawk... nawk
    checking whether make sets $(MAKE)... yes
    checking for gcc... gcc
    checking whether the C compiler works... yes
    checking for C compiler default output file name... a.out
    checking for suffix of executables...
    checking whether we are cross compiling... no
    checking for suffix of object files... o
    checking whether we are using the GNU C compiler... yes
    checking whether gcc accepts -g... yes
    checking for gcc option to accept ISO C89... none needed
    checking for style of include used by make... GNU
    checking dependency style of gcc... gcc3
    checking build system type... x86_64-unknown-freebsd11.0
    checking host system type... x86_64-unknown-freebsd11.0
    checking how to print strings... printf
    checking for a sed that does not truncate output... /usr/bin/sed
    checking for grep that handles long lines and -e... /usr/bin/grep
    checking for egrep... /usr/bin/grep -E
    checking for fgrep... /usr/bin/grep -F
    checking for ld used by gcc... /usr/local/bin/ld
    checking if the linker (/usr/local/bin/ld) is GNU ld... yes
    checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm -B
    checking the name lister (/usr/local/bin/nm -B) interface... BSD nm
    checking whether ln -s works... yes
    checking the maximum length of command line arguments... 196608
    checking whether the shell understands some XSI constructs... yes
    checking whether the shell understands "+="... no
    checking how to convert x86_64-unknown-freebsd11.0 file names to x86_64-unknown-freebsd11.0 format... func_convert_file_noop
    checking how to convert x86_64-unknown-freebsd11.0 file names to toolchain format... func_convert_file_noop
    checking for /usr/local/bin/ld option to reload object files... -r
    checking for objdump... objdump
    checking how to recognize dependent libraries... pass_all
    checking for dlltool... no
    checking how to associate runtime and link libraries... printf %s\n
    checking for ar... ar
    checking for archiver @FILE support... no
    checking for strip... strip
    checking for ranlib... ranlib
    checking command to parse /usr/local/bin/nm -B output from gcc object... ok
    checking for sysroot... no
    checking for mt... mt
    checking if mt is a manifest tool... no
    checking how to run the C preprocessor... gcc -E
    checking for ANSI C header files... yes
    checking for sys/types.h... yes
    checking for sys/stat.h... yes
    checking for stdlib.h... yes
    checking for string.h... yes
    checking for memory.h... yes
    checking for strings.h... yes
    checking for inttypes.h... yes
    checking for stdint.h... yes
    checking for unistd.h... yes
    checking for dlfcn.h... yes
    checking for objdir... .libs
    checking if gcc supports -fno-rtti -fno-exceptions... no
    checking for gcc option to produce PIC... -fPIC -DPIC
    checking if gcc PIC flag -fPIC -DPIC works... yes
    checking if gcc static flag -static works... yes
    checking if gcc supports -c -o file.o... yes
    checking if gcc supports -c -o file.o... (cached) yes
    checking whether the gcc linker (/usr/local/bin/ld) supports shared libraries... yes
    checking whether -lc should be explicitly linked in... no
    checking dynamic linker characteristics... freebsd11.0 ld.so
    checking how to hardcode library paths into programs... immediate
    checking whether stripping libraries is possible... no
    checking if libtool supports shared libraries... yes
    checking whether to build shared libraries... yes
    checking whether to build static libraries... yes
    checking whether make sets $(MAKE)... (cached) yes
    checking for ANSI C header files... (cached) yes
    checking for stdlib.h... (cached) yes
    checking for string.h... (cached) yes
    checking for strings.h... (cached) yes
    checking sys/time.h usability... yes
    checking sys/time.h presence... yes
    checking for sys/time.h... yes
    checking for unistd.h... (cached) yes
    checking sys/times.h usability... yes
    checking sys/times.h presence... yes
    checking for sys/times.h... yes
    checking size of int... 4
    checking size of short... 2
    checking size of long... 8
    checking for an ANSI C-conforming const... yes
    checking whether time.h and sys/time.h may both be included... yes
    checking for size_t... yes
    checking for working alloca.h... no
    checking for alloca... yes
    checking for working memcmp... yes
    checking for prototypes... yes
    checking for variable length prototypes and stdarg.h... yes
    configure: creating ./config.status
    config.status: creating Makefile
    config.status: creating onig-config
    config.status: creating sample/Makefile
    config.status: creating config.h
    config.status: config.h is unchanged
    config.status: executing depfiles commands
    config.status: executing libtool commands
    config.status: executing default commands
    Executing: make
    make  all-recursive
    Making all in .
    sed                                           -e 's,[@]datadir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/share,g'                  -e 's,[@]datarootdir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/share,g'          -e 's,[@]PACKAGE_VERSION[@],5.9.6,g'  -e 's,[@]prefix[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6,g'                    -e 's,[@]exec_prefix[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6,g'          -e 's,[@]libdir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/lib,g'                    -e 's,[@]includedir[@],/tmp/pip-build-l9_T4z/jq/onig-install-5.9.6/include,g' <  > oniguruma.pc
    /bin/sh: Syntax error: redirection unexpected (expecting word)
    *** Error code 2

    Stop.
    make[2]: stopped in /tmp/pip-build-l9_T4z/jq/onig-5.9.6
    *** Error code 1

    Stop.
    make[1]: stopped in /tmp/pip-build-l9_T4z/jq/onig-5.9.6
    *** Error code 1

    Stop.
    make: stopped in /tmp/pip-build-l9_T4z/jq/onig-5.9.6
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-l9_T4z/jq/setup.py", line 123, in <module>
        'Programming Language :: Python :: 3.5',
      File "/usr/local/lib/python2.7/distutils/core.py", line 151, in setup
        dist.run_commands()
      File "/usr/local/lib/python2.7/distutils/dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/usr/local/lib/python2.7/site-packages/setuptools/command/install.py", line 61, in run
        return orig.install.run(self)
      File "/usr/local/lib/python2.7/distutils/command/install.py", line 563, in run
        self.run_command('build')
      File "/usr/local/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/usr/local/lib/python2.7/distutils/command/build.py", line 127, in run
        self.run_command(cmd_name)
      File "/usr/local/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/usr/local/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/tmp/pip-build-l9_T4z/jq/setup.py", line 40, in run
        self._build_oniguruma()
      File "/tmp/pip-build-l9_T4z/jq/setup.py", line 52, in _build_oniguruma
        ["make", "install"],
      File "/tmp/pip-build-l9_T4z/jq/setup.py", line 79, in _build_lib
        run_command(command)
      File "/tmp/pip-build-l9_T4z/jq/setup.py", line 76, in run_command
        subprocess.check_call(args, cwd=lib_dir)
      File "/usr/local/lib/python2.7/subprocess.py", line 541, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['make']' returned non-zero exit status 1

    ----------------------------------------
Command "/usr/local/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-l9_T4z/jq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-JtEC3x-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-l9_T4z/jq/

setup.py compiler failure under ubuntu 16.10

A snippet of the error which likely shows enough information to determine why is included below:

creating build/lib.linux-x86_64-3.5
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro
-Wl,-Bsymbolic-functions -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6tVwKN/python3.5-3.5.2=. -fstack
-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.
5/jq.o /home/estes/pkg/jq-0.1.6/jq-jq-1.5/.libs/libjq.a /home/estes/pkg/jq-0.1.6/onig-install-5.9.6/lib/libon
ig.a -o build/lib.linux-x86_64-3.5/jq.cpython-35m-x86_64-linux-gnu.so
/usr/bin/ld: i386 architecture of input file `/home/estes/pkg/jq-0.1.6/jq-jq-1.5/.libs/libjq.a(execute.o)' is
incompatible with i386:x86-64 output
.... MANY MORE SIMILAR ERRORS

OS X 10.12.1 build failure: dyld: Library not loaded: /usr/local/opt/readline/lib/libreadline.6.dylib

Sad panda... Looks like I'm in the market to find a new JSON query library.

$ sudo -H pip install pyjq
Collecting pyjq
  Using cached pyjq-2.0.0.zip
Requirement already satisfied (use --upgrade to upgrade): six in /Library/Python/2.7/site-packages/six-1.10.0-py2.7.egg (from pyjq)
Installing collected packages: pyjq
  Running setup.py install for pyjq ... error
    Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-mMZOTT/pyjq/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-_G2rtW-record/install-record.txt --single-version-externally-managed --compile:
    running install
    running build
    running build_py
    creating build
    creating build/lib.macosx-10.12-intel-2.7
    copying pyjq.py -> build/lib.macosx-10.12-intel-2.7
    running build_ext
    checking for a BSD-compatible install... /usr/bin/install -c
    checking whether build environment is sane... yes
    checking for a thread-safe mkdir -p... ./install-sh -c -d
    checking for gawk... gawk
    checking whether make sets $(MAKE)... yes
    checking for gcc... gcc
    checking whether the C compiler works... yes
    checking for C compiler default output file name... a.out
    checking for suffix of executables...
    checking whether we are cross compiling... no
    checking for suffix of object files... o
    checking whether we are using the GNU C compiler... yes
    checking whether gcc accepts -g... yes
    checking for gcc option to accept ISO C89... none needed
    checking for style of include used by make... GNU
    checking dependency style of gcc... gcc3
    checking build system type... i386-apple-darwin16.1.0
    checking host system type... i386-apple-darwin16.1.0
    checking how to print strings... printf
    checking for a sed that does not truncate output... /usr/bin/sed
    checking for grep that handles long lines and -e... /usr/bin/grep
    checking for egrep... /usr/bin/grep -E
    checking for fgrep... /usr/bin/grep -F
    checking for ld used by gcc... /Applications/Xcode-beta.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
    checking if the linker (/Applications/Xcode-beta.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
    checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
    checking the name lister (/usr/bin/nm -B) interface... BSD nm
    checking whether ln -s works... yes
    checking the maximum length of command line arguments... 196608
    checking whether the shell understands some XSI constructs... yes
    checking whether the shell understands "+="... yes
    checking how to convert i386-apple-darwin16.1.0 file names to i386-apple-darwin16.1.0 format... func_convert_file_noop
    checking how to convert i386-apple-darwin16.1.0 file names to toolchain format... func_convert_file_noop
    checking for /Applications/Xcode-beta.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
    checking for objdump... objdump
    checking how to recognize dependent libraries... pass_all
    checking for dlltool... no
    checking how to associate runtime and link libraries... printf %s\n
    checking for ar... ar
    checking for archiver @FILE support... no
    checking for strip... strip
    checking for ranlib... ranlib
    checking command to parse /usr/bin/nm -B output from gcc object... ok
    checking for sysroot... no
    checking for mt... no
    checking if : is a manifest tool... no
    checking for dsymutil... dsymutil
    checking for nmedit... nmedit
    checking for lipo... lipo
    checking for otool... otool
    checking for otool64... no
    checking for -single_module linker flag... yes
    checking for -exported_symbols_list linker flag... yes
    checking for -force_load linker flag... yes
    checking how to run the C preprocessor... gcc -E
    checking for ANSI C header files... yes
    checking for sys/types.h... yes
    checking for sys/stat.h... yes
    checking for stdlib.h... yes
    checking for string.h... yes
    checking for memory.h... yes
    checking for strings.h... yes
    checking for inttypes.h... yes
    checking for stdint.h... yes
    checking for unistd.h... yes
    checking for dlfcn.h... yes
    checking for objdir... .libs
    checking if gcc supports -fno-rtti -fno-exceptions... yes
    checking for gcc option to produce PIC... -fno-common -DPIC
    checking if gcc PIC flag -fno-common -DPIC works... yes
    checking if gcc static flag -static works... no
    checking if gcc supports -c -o file.o... yes
    checking if gcc supports -c -o file.o... (cached) yes
    checking whether the gcc linker (/Applications/Xcode-beta.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
    checking dynamic linker characteristics... dyld: Library not loaded: /usr/local/opt/readline/lib/libreadline.6.dylib
      Referenced from: /usr/local/bin/awk
      Reason: image not found
    LLVM ERROR: IO failure on output stream.
    dyld: Library not loaded: /usr/local/opt/readline/lib/libreadline.6.dylib
      Referenced from: /usr/local/bin/awk
      Reason: image not found
    darwin16.1.0 dyld
    checking how to hardcode library paths into programs... immediate
    checking whether stripping libraries is possible... yes
    checking if libtool supports shared libraries... yes
    checking whether to build shared libraries... no
    checking whether to build static libraries... yes
    checking whether make sets $(MAKE)... (cached) yes
    checking for ANSI C header files... (cached) yes
    checking for stdlib.h... (cached) yes
    checking for string.h... (cached) yes
    checking for strings.h... (cached) yes
    checking sys/time.h usability... yes
    checking sys/time.h presence... yes
    checking for sys/time.h... yes
    checking for unistd.h... (cached) yes
    checking sys/times.h usability... yes
    checking sys/times.h presence... yes
    checking for sys/times.h... yes
    checking size of int... 4
    checking size of short... 2
    checking size of long... 8
    checking for an ANSI C-conforming const... yes
    checking whether time.h and sys/time.h may both be included... yes
    checking for size_t... yes
    checking for working alloca.h... yes
    checking for alloca... yes
    checking for working memcmp... yes
    checking for prototypes... yes
    checking for variable length prototypes and stdarg.h... yes
    configure: creating ./config.status
    config.status: creating Makefile
    dyld: Library not loaded: /usr/local/opt/readline/lib/libreadline.6.dylib
      Referenced from: /usr/local/bin/gawk
      Reason: image not found
    sed: stdout: Broken pipe
    ./config.status: line 1184: 61884 Done(1)                 eval sed \"\$ac_sed_extra\" "$ac_file_inputs"
         61885 Abort trap: 6           | $AWK -f "$ac_tmp/subs.awk" > $ac_tmp/out
    config.status: error: could not create Makefile
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/tmp/pip-build-mMZOTT/pyjq/setup.py", line 116, in <module>
        'Programming Language :: JavaScript',
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup
        dist.run_commands()
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/setuptools/command/install.py", line 61, in run
        return orig.install.run(self)
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/install.py", line 573, in run
        self.run_command('build')
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build.py", line 127, in run
        self.run_command(cmd_name)
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/private/tmp/pip-build-mMZOTT/pyjq/setup.py", line 29, in run
        self._build_oniguruma()
      File "/private/tmp/pip-build-mMZOTT/pyjq/setup.py", line 43, in _build_oniguruma
        ["make", "install"],
      File "/private/tmp/pip-build-mMZOTT/pyjq/setup.py", line 70, in _build_lib
        subprocess.check_call(command, cwd=lib_dir)
      File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 540, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['./configure', 'CFLAGS=-fPIC', '--disable-shared', '--prefix', '/private/tmp/pip-build-mMZOTT/pyjq/dependencies/onig_install']' returned non-zero exit status 1

    ----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/private/tmp/pip-build-mMZOTT/pyjq/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-_G2rtW-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/tmp/pip-build-mMZOTT/pyjq/

$ ls -lh /usr/local/opt/readline/lib/libreadline*
-r--r--r--  1 jamie  admin   449K Oct  7 22:48 /usr/local/opt/readline/lib/libreadline.7.0.dylib
lrwxr-xr-x  1 jamie  admin    21B Sep  7 16:16 /usr/local/opt/readline/lib/libreadline.7.dylib -> libreadline.7.0.dylib
-r--r--r--  1 jamie  admin   734K Sep  7 16:16 /usr/local/opt/readline/lib/libreadline.a
lrwxr-xr-x  1 jamie  admin    21B Sep  7 16:16 /usr/local/opt/readline/lib/libreadline.dylib -> libreadline.7.0.dylib

$ brew install autoconf automake libtool
Warning: autoconf-2.69 already installed
Warning: automake-1.15 already installed
Warning: libtool-2.4.6_1 already installed

$ brew install readline
Warning: readline-7.0 already installed

$ sw_vers
ProductName:    Mac OS X
ProductVersion: 10.12.1
BuildVersion:   16B2338c

Installing jq onto Windows

The library looks great. I'm doing development in Python on windows. And not sure how to install this on Windows as a python library. I took at the setting up on the Linux side. And didn't figure out how to deploy this to Windows. Any links to help? Thanks

Trouble installing through a proxy

In setup.py, urlretrieve() does not appear to respect proxy environment variables, unlike urlopen(). This has the unfortunate consequence of making pip install jq fail in firewalled premises.

Bug with map on array

Hello!

This is a great library. Thank you for providing it!

I found the following inconsistency between jq on bash, and in this library:

bash

$ echo '[1,2,3,4]' | jq '.[]'
1
2
3
4

python

In [87]: z = [1,2,3,4]

In [88]: jq('.[]').transform(z)
Out[88]: 1

versions:

 $ pip freeze|grep jq
jq==0.1.6

$ jq --version
jq-1.5

In python, the return value should be an array. Is there something I am doing incorrectly? Is there a version mismatch?

cmath functions not available

This may be user-error, but attempts to compile statements with cmath operators are causing compilation errors showing they're not available:

Traceback (most recent call last):
  File "<input>", line 1, in <module>
  File "jq.pyx", line 124, in jq.compile
  File "jq.pyx", line 236, in jq._Program.__cinit__
  File "jq.pyx", line 207, in jq._JqStatePool.__cinit__
  File "jq.pyx", line 158, in jq._compile
  File "jq.pyx", line 141, in jq._compile
  File "jq.pyx", line 152, in jq._compile
ValueError: jq: error: pow/1 is not defined at <top-level>, line 1:
.[] | pow(.x, 2)      
jq: 1 compile error
jq.compile(".[] | sin(.x)").input([{'x': 2}]).all()
Traceback (most recent call last):
  File "<input>", line 1, in <module>
  File "jq.pyx", line 124, in jq.compile
  File "jq.pyx", line 236, in jq._Program.__cinit__
  File "jq.pyx", line 207, in jq._JqStatePool.__cinit__
  File "jq.pyx", line 158, in jq._compile
  File "jq.pyx", line 141, in jq._compile
  File "jq.pyx", line 152, in jq._compile
ValueError: jq: error: sin/1 is not defined at <top-level>, line 1:
.[] | sin(.x)      
jq: 1 compile error

If these are not available, can we please fix this to have linking so that math functions are correctly available as described https://stedolan.github.io/jq/manual/v1.5/#Math ?

Bundled JQ 1.6 not manylinux compatible

The following steps:

docker run --rm -it ubuntu:16.04
apt update && apt install python3 python3-pip
pip3 install jq
python3 -c "import jq"

produce this error:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
ImportError: /usr/local/lib/python3.5/dist-packages/jq.cpython-35m-x86_64-linux-gnu.so: symbol scalbln, version GLIBC_2.2.5 not defined in file libc.so.6 with link time reference

@lukasheinrich and @matthewfeickert noticed this trying to run on Travis. Note that on Travis JQ 1.5 is already available. When building the wheel, running repair_wheel on the JQ binary should have detected this issue.

FYI, this is the manylinux2010 wheel, but I assume both of them have this problem.

Support for files/pipes as input instead of just text

I would like to process large files which contain JSON objects separated by CRLF.

I would like to start iterating over the objects, as processed by jq, before reading the whole file into memory. As far as I understand, the command-line form of jq produces results in this case as the data is piped in from stdin, and not only when the pipe has been closed.

Would this be possible to implement in jq.py by giving an open file, a TextInputWrapper, or maybe a file name? Am I wrong about jq not processing the whole file before producing results in this case? If it is not possible to implement, what are the barriers to this?

Specifying options like in CLI? Alternative workarounds?

Thanks for making this project!
I'm currently using this module on a webserver, and was wondering if there was a way to specify directories such as in the CLI:

-Ldirectory / -L directory: Prepend directory to the search list for modules. If this option is used then no builtin search list is used. See the section on modules below

Im unsure if there's a way to do that through this module, but was wondering if there were any alternatives. I was hoping to specify my functions in a .jq module in my project's directory. How do you normally handle custom functions in your projects?

Unexpected behavior getting first item of empty array

I would have expected the following to return None:

jq.compile(".[]").input([]).first()

but it instead raises a StopIteration exception:

>>> import jq
>>> jq.compile(".[]").input([]).first()
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "jq.pyx", line 278, in jq._ProgramWithInput.first
  File "jq.pyx", line 309, in jq._ResultIterator.__next__
  File "jq.pyx", line 337, in jq._ResultIterator._ready_next_input
StopIteration

Is this the correct behavior and I'm misunderstanding the situation? Thanks!

Note: workaround is to use .[0] instead (see below), which correctly returns None, but I'd like the flexibility to fetch all with .[] and then have the option to just fetch the first with .first.

jq.compile(".[0]").input([]).first()
# returns None

Symbol not found: _OnigEncodingUTF8

Hello,

Please, could you help me?
I've installed with success, but can't import it...

Install:

ARCHFLAGS="-arch x86_64" pip install jq
Collecting jq
  Downloading jq-0.1.5.tar.gz
Installing collected packages: jq
  Running setup.py install for jq
Successfully installed jq-0.1.5

But in python repl:

>>> import jq
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ImportError: dlopen(/usr/local/lib/python2.7/site-packages/jq.so, 2): Symbol not found: _OnigEncodingUTF8
  Referenced from: /usr/local/lib/python2.7/site-packages/jq.so
  Expected in: flat namespace
 in /usr/local/lib/python2.7/site-packages/jq.so

Do you have any clue of what happened?
I'm in a mac os 10.10.5 Yosemite.
Thank you!!

pip install fails

Trying to install jq with pip install jq. Seems that is stumbles over:

    fatal: Not a git repository (or any of the parent directories): .git
    fatal: Not a git repository (or any of the parent directories): .git

full output is:

DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Collecting jq
  Using cached https://files.pythonhosted.org/packages/82/0c/bf3f544f850cef19f4468bea93e4d0aa908e0d8c601609ba1ed561b42c79/jq-0.1.6.tar.gz
Building wheels for collected packages: jq
  Building wheel for jq (setup.py) ... error
  Complete output from command /gpfs1/data/galaxy_server/galaxy-dev/.venv/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-4BZXbj/jq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-vvSnfw --python-tag cp27:
  running bdist_wheel
  running build
  running build_ext
  Executing: ./configure CFLAGS=-fPIC --prefix=/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6
  checking for a BSD-compatible install... /usr/bin/install -c
  checking whether build environment is sane... yes
  checking for a thread-safe mkdir -p... /bin/mkdir -p
  checking for gawk... gawk
  checking whether make sets $(MAKE)... yes
  checking for gcc... /usr/local/gcc/5.2.0-1/bin/gcc
  checking whether the C compiler works... yes
  checking for C compiler default output file name... a.out
  checking for suffix of executables...
  checking whether we are cross compiling... no
  checking for suffix of object files... o
  checking whether we are using the GNU C compiler... yes
  checking whether /usr/local/gcc/5.2.0-1/bin/gcc accepts -g... yes
  checking for /usr/local/gcc/5.2.0-1/bin/gcc option to accept ISO C89... none needed
  checking for style of include used by make... GNU
  checking dependency style of /usr/local/gcc/5.2.0-1/bin/gcc... gcc3
  checking build system type... x86_64-unknown-linux-gnu
  checking host system type... x86_64-unknown-linux-gnu
  checking how to print strings... printf
  checking for a sed that does not truncate output... /bin/sed
  checking for grep that handles long lines and -e... /bin/grep
  checking for egrep... /bin/grep -E
  checking for fgrep... /bin/grep -F
  checking for ld used by /usr/local/gcc/5.2.0-1/bin/gcc... /usr/bin/ld
  checking if the linker (/usr/bin/ld) is GNU ld... yes
  checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
  checking the name lister (/usr/bin/nm -B) interface... BSD nm
  checking whether ln -s works... yes
  checking the maximum length of command line arguments... 3458764513820540925
  checking whether the shell understands some XSI constructs... yes
  checking whether the shell understands "+="... yes
  checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
  checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
  checking for /usr/bin/ld option to reload object files... -r
  checking for objdump... objdump
  checking how to recognize dependent libraries... pass_all
  checking for dlltool... no
  checking how to associate runtime and link libraries... printf %s\n
  checking for ar... ar
  checking for archiver @FILE support... @
  checking for strip... strip
  checking for ranlib... ranlib
  checking command to parse /usr/bin/nm -B output from /usr/local/gcc/5.2.0-1/bin/gcc object... ok
  checking for sysroot... no
  checking for mt... no
  checking if : is a manifest tool... no
  checking how to run the C preprocessor... /usr/local/gcc/5.2.0-1/bin/gcc -E
  checking for ANSI C header files... yes
  checking for sys/types.h... yes
  checking for sys/stat.h... yes
  checking for stdlib.h... yes
  checking for string.h... yes
  checking for memory.h... yes
  checking for strings.h... yes
  checking for inttypes.h... yes
  checking for stdint.h... yes
  checking for unistd.h... yes
  checking for dlfcn.h... yes
  checking for objdir... .libs
  checking if /usr/local/gcc/5.2.0-1/bin/gcc supports -fno-rtti -fno-exceptions... no
  checking for /usr/local/gcc/5.2.0-1/bin/gcc option to produce PIC... -fPIC -DPIC
  checking if /usr/local/gcc/5.2.0-1/bin/gcc PIC flag -fPIC -DPIC works... yes
  checking if /usr/local/gcc/5.2.0-1/bin/gcc static flag -static works... no
  checking if /usr/local/gcc/5.2.0-1/bin/gcc supports -c -o file.o... yes
  checking if /usr/local/gcc/5.2.0-1/bin/gcc supports -c -o file.o... (cached) yes
  checking whether the /usr/local/gcc/5.2.0-1/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
  checking whether -lc should be explicitly linked in... no
  checking dynamic linker characteristics... GNU/Linux ld.so
  checking how to hardcode library paths into programs... immediate
  checking whether stripping libraries is possible... yes
  checking if libtool supports shared libraries... yes
  checking whether to build shared libraries... yes
  checking whether to build static libraries... yes
  checking whether make sets $(MAKE)... (cached) yes
  checking for ANSI C header files... (cached) yes
  checking for stdlib.h... (cached) yes
  checking for string.h... (cached) yes
  checking for strings.h... (cached) yes
  checking sys/time.h usability... yes
  checking sys/time.h presence... yes
  checking for sys/time.h... yes
  checking for unistd.h... (cached) yes
  checking sys/times.h usability... yes
  checking sys/times.h presence... yes
  checking for sys/times.h... yes
  checking size of int... 4
  checking size of short... 2
  checking size of long... 8
  checking for an ANSI C-conforming const... yes
  checking whether time.h and sys/time.h may both be included... yes
  checking for size_t... yes
  checking for working alloca.h... yes
  checking for alloca... yes
  checking for working memcmp... yes
  checking for prototypes... yes
  checking for variable length prototypes and stdarg.h... yes
  configure: creating ./config.status
  config.status: creating Makefile
  config.status: creating onig-config
  config.status: creating sample/Makefile
  config.status: creating config.h
  config.status: executing depfiles commands
  config.status: executing libtool commands
  config.status: executing default commands
  Executing: make
  make  all-recursive
  make[1]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  Making all in .
  make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regerror.lo -MD -MP -MF .deps/regerror.Tpo -c -o regerror.lo regerror.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regerror.lo -MD -MP -MF .deps/regerror.Tpo -c regerror.c  -fPIC -DPIC -o .libs/regerror.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regerror.lo -MD -MP -MF .deps/regerror.Tpo -c regerror.c -o regerror.o >/dev/null 2>&1
  mv -f .deps/regerror.Tpo .deps/regerror.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regparse.lo -MD -MP -MF .deps/regparse.Tpo -c -o regparse.lo regparse.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regparse.lo -MD -MP -MF .deps/regparse.Tpo -c regparse.c  -fPIC -DPIC -o .libs/regparse.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regparse.lo -MD -MP -MF .deps/regparse.Tpo -c regparse.c -o regparse.o >/dev/null 2>&1
  mv -f .deps/regparse.Tpo .deps/regparse.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regext.lo -MD -MP -MF .deps/regext.Tpo -c -o regext.lo regext.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regext.lo -MD -MP -MF .deps/regext.Tpo -c regext.c  -fPIC -DPIC -o .libs/regext.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regext.lo -MD -MP -MF .deps/regext.Tpo -c regext.c -o regext.o >/dev/null 2>&1
  mv -f .deps/regext.Tpo .deps/regext.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regcomp.lo -MD -MP -MF .deps/regcomp.Tpo -c -o regcomp.lo regcomp.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regcomp.lo -MD -MP -MF .deps/regcomp.Tpo -c regcomp.c  -fPIC -DPIC -o .libs/regcomp.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regcomp.lo -MD -MP -MF .deps/regcomp.Tpo -c regcomp.c -o regcomp.o >/dev/null 2>&1
  mv -f .deps/regcomp.Tpo .deps/regcomp.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regexec.lo -MD -MP -MF .deps/regexec.Tpo -c -o regexec.lo regexec.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regexec.lo -MD -MP -MF .deps/regexec.Tpo -c regexec.c  -fPIC -DPIC -o .libs/regexec.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regexec.lo -MD -MP -MF .deps/regexec.Tpo -c regexec.c -o regexec.o >/dev/null 2>&1
  mv -f .deps/regexec.Tpo .deps/regexec.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT reggnu.lo -MD -MP -MF .deps/reggnu.Tpo -c -o reggnu.lo reggnu.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT reggnu.lo -MD -MP -MF .deps/reggnu.Tpo -c reggnu.c  -fPIC -DPIC -o .libs/reggnu.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT reggnu.lo -MD -MP -MF .deps/reggnu.Tpo -c reggnu.c -o reggnu.o >/dev/null 2>&1
  mv -f .deps/reggnu.Tpo .deps/reggnu.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regenc.lo -MD -MP -MF .deps/regenc.Tpo -c -o regenc.lo regenc.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regenc.lo -MD -MP -MF .deps/regenc.Tpo -c regenc.c  -fPIC -DPIC -o .libs/regenc.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regenc.lo -MD -MP -MF .deps/regenc.Tpo -c regenc.c -o regenc.o >/dev/null 2>&1
  mv -f .deps/regenc.Tpo .deps/regenc.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regsyntax.lo -MD -MP -MF .deps/regsyntax.Tpo -c -o regsyntax.lo regsyntax.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regsyntax.lo -MD -MP -MF .deps/regsyntax.Tpo -c regsyntax.c  -fPIC -DPIC -o .libs/regsyntax.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regsyntax.lo -MD -MP -MF .deps/regsyntax.Tpo -c regsyntax.c -o regsyntax.o >/dev/null 2>&1
  mv -f .deps/regsyntax.Tpo .deps/regsyntax.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regtrav.lo -MD -MP -MF .deps/regtrav.Tpo -c -o regtrav.lo regtrav.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regtrav.lo -MD -MP -MF .deps/regtrav.Tpo -c regtrav.c  -fPIC -DPIC -o .libs/regtrav.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regtrav.lo -MD -MP -MF .deps/regtrav.Tpo -c regtrav.c -o regtrav.o >/dev/null 2>&1
  mv -f .deps/regtrav.Tpo .deps/regtrav.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regversion.lo -MD -MP -MF .deps/regversion.Tpo -c -o regversion.lo regversion.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regversion.lo -MD -MP -MF .deps/regversion.Tpo -c regversion.c  -fPIC -DPIC -o .libs/regversion.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regversion.lo -MD -MP -MF .deps/regversion.Tpo -c regversion.c -o regversion.o >/dev/null 2>&1
  mv -f .deps/regversion.Tpo .deps/regversion.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT st.lo -MD -MP -MF .deps/st.Tpo -c -o st.lo st.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT st.lo -MD -MP -MF .deps/st.Tpo -c st.c  -fPIC -DPIC -o .libs/st.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT st.lo -MD -MP -MF .deps/st.Tpo -c st.c -o st.o >/dev/null 2>&1
  mv -f .deps/st.Tpo .deps/st.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regposix.lo -MD -MP -MF .deps/regposix.Tpo -c -o regposix.lo regposix.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regposix.lo -MD -MP -MF .deps/regposix.Tpo -c regposix.c  -fPIC -DPIC -o .libs/regposix.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regposix.lo -MD -MP -MF .deps/regposix.Tpo -c regposix.c -o regposix.o >/dev/null 2>&1
  mv -f .deps/regposix.Tpo .deps/regposix.Plo
  /bin/sh ./libtool --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT regposerr.lo -MD -MP -MF .deps/regposerr.Tpo -c -o regposerr.lo regposerr.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regposerr.lo -MD -MP -MF .deps/regposerr.Tpo -c regposerr.c  -fPIC -DPIC -o .libs/regposerr.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT regposerr.lo -MD -MP -MF .deps/regposerr.Tpo -c regposerr.c -o regposerr.o >/dev/null 2>&1
  mv -f .deps/regposerr.Tpo .deps/regposerr.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT unicode.lo -MD -MP -MF .deps/unicode.Tpo -c -o unicode.lo `test -f './enc/unicode.c' || echo './'`./enc/unicode.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT unicode.lo -MD -MP -MF .deps/unicode.Tpo -c ./enc/unicode.c  -fPIC -DPIC -o .libs/unicode.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT unicode.lo -MD -MP -MF .deps/unicode.Tpo -c ./enc/unicode.c -o unicode.o >/dev/null 2>&1
  mv -f .deps/unicode.Tpo .deps/unicode.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT ascii.lo -MD -MP -MF .deps/ascii.Tpo -c -o ascii.lo `test -f './enc/ascii.c' || echo './'`./enc/ascii.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT ascii.lo -MD -MP -MF .deps/ascii.Tpo -c ./enc/ascii.c  -fPIC -DPIC -o .libs/ascii.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT ascii.lo -MD -MP -MF .deps/ascii.Tpo -c ./enc/ascii.c -o ascii.o >/dev/null 2>&1
  mv -f .deps/ascii.Tpo .deps/ascii.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT utf8.lo -MD -MP -MF .deps/utf8.Tpo -c -o utf8.lo `test -f './enc/utf8.c' || echo './'`./enc/utf8.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf8.lo -MD -MP -MF .deps/utf8.Tpo -c ./enc/utf8.c  -fPIC -DPIC -o .libs/utf8.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf8.lo -MD -MP -MF .deps/utf8.Tpo -c ./enc/utf8.c -o utf8.o >/dev/null 2>&1
  mv -f .deps/utf8.Tpo .deps/utf8.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT utf16_be.lo -MD -MP -MF .deps/utf16_be.Tpo -c -o utf16_be.lo `test -f './enc/utf16_be.c' || echo './'`./enc/utf16_be.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf16_be.lo -MD -MP -MF .deps/utf16_be.Tpo -c ./enc/utf16_be.c  -fPIC -DPIC -o .libs/utf16_be.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf16_be.lo -MD -MP -MF .deps/utf16_be.Tpo -c ./enc/utf16_be.c -o utf16_be.o >/dev/null 2>&1
  mv -f .deps/utf16_be.Tpo .deps/utf16_be.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT utf16_le.lo -MD -MP -MF .deps/utf16_le.Tpo -c -o utf16_le.lo `test -f './enc/utf16_le.c' || echo './'`./enc/utf16_le.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf16_le.lo -MD -MP -MF .deps/utf16_le.Tpo -c ./enc/utf16_le.c  -fPIC -DPIC -o .libs/utf16_le.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf16_le.lo -MD -MP -MF .deps/utf16_le.Tpo -c ./enc/utf16_le.c -o utf16_le.o >/dev/null 2>&1
  mv -f .deps/utf16_le.Tpo .deps/utf16_le.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT utf32_be.lo -MD -MP -MF .deps/utf32_be.Tpo -c -o utf32_be.lo `test -f './enc/utf32_be.c' || echo './'`./enc/utf32_be.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf32_be.lo -MD -MP -MF .deps/utf32_be.Tpo -c ./enc/utf32_be.c  -fPIC -DPIC -o .libs/utf32_be.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf32_be.lo -MD -MP -MF .deps/utf32_be.Tpo -c ./enc/utf32_be.c -o utf32_be.o >/dev/null 2>&1
  mv -f .deps/utf32_be.Tpo .deps/utf32_be.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT utf32_le.lo -MD -MP -MF .deps/utf32_le.Tpo -c -o utf32_le.lo `test -f './enc/utf32_le.c' || echo './'`./enc/utf32_le.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf32_le.lo -MD -MP -MF .deps/utf32_le.Tpo -c ./enc/utf32_le.c  -fPIC -DPIC -o .libs/utf32_le.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT utf32_le.lo -MD -MP -MF .deps/utf32_le.Tpo -c ./enc/utf32_le.c -o utf32_le.o >/dev/null 2>&1
  mv -f .deps/utf32_le.Tpo .deps/utf32_le.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT euc_jp.lo -MD -MP -MF .deps/euc_jp.Tpo -c -o euc_jp.lo `test -f './enc/euc_jp.c' || echo './'`./enc/euc_jp.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT euc_jp.lo -MD -MP -MF .deps/euc_jp.Tpo -c ./enc/euc_jp.c  -fPIC -DPIC -o .libs/euc_jp.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT euc_jp.lo -MD -MP -MF .deps/euc_jp.Tpo -c ./enc/euc_jp.c -o euc_jp.o >/dev/null 2>&1
  mv -f .deps/euc_jp.Tpo .deps/euc_jp.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT sjis.lo -MD -MP -MF .deps/sjis.Tpo -c -o sjis.lo `test -f './enc/sjis.c' || echo './'`./enc/sjis.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT sjis.lo -MD -MP -MF .deps/sjis.Tpo -c ./enc/sjis.c  -fPIC -DPIC -o .libs/sjis.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT sjis.lo -MD -MP -MF .deps/sjis.Tpo -c ./enc/sjis.c -o sjis.o >/dev/null 2>&1
  mv -f .deps/sjis.Tpo .deps/sjis.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_1.lo -MD -MP -MF .deps/iso8859_1.Tpo -c -o iso8859_1.lo `test -f './enc/iso8859_1.c' || echo './'`./enc/iso8859_1.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_1.lo -MD -MP -MF .deps/iso8859_1.Tpo -c ./enc/iso8859_1.c  -fPIC -DPIC -o .libs/iso8859_1.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_1.lo -MD -MP -MF .deps/iso8859_1.Tpo -c ./enc/iso8859_1.c -o iso8859_1.o >/dev/null 2>&1
  mv -f .deps/iso8859_1.Tpo .deps/iso8859_1.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_2.lo -MD -MP -MF .deps/iso8859_2.Tpo -c -o iso8859_2.lo `test -f './enc/iso8859_2.c' || echo './'`./enc/iso8859_2.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_2.lo -MD -MP -MF .deps/iso8859_2.Tpo -c ./enc/iso8859_2.c  -fPIC -DPIC -o .libs/iso8859_2.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_2.lo -MD -MP -MF .deps/iso8859_2.Tpo -c ./enc/iso8859_2.c -o iso8859_2.o >/dev/null 2>&1
  mv -f .deps/iso8859_2.Tpo .deps/iso8859_2.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_3.lo -MD -MP -MF .deps/iso8859_3.Tpo -c -o iso8859_3.lo `test -f './enc/iso8859_3.c' || echo './'`./enc/iso8859_3.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_3.lo -MD -MP -MF .deps/iso8859_3.Tpo -c ./enc/iso8859_3.c  -fPIC -DPIC -o .libs/iso8859_3.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_3.lo -MD -MP -MF .deps/iso8859_3.Tpo -c ./enc/iso8859_3.c -o iso8859_3.o >/dev/null 2>&1
  mv -f .deps/iso8859_3.Tpo .deps/iso8859_3.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_4.lo -MD -MP -MF .deps/iso8859_4.Tpo -c -o iso8859_4.lo `test -f './enc/iso8859_4.c' || echo './'`./enc/iso8859_4.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_4.lo -MD -MP -MF .deps/iso8859_4.Tpo -c ./enc/iso8859_4.c  -fPIC -DPIC -o .libs/iso8859_4.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_4.lo -MD -MP -MF .deps/iso8859_4.Tpo -c ./enc/iso8859_4.c -o iso8859_4.o >/dev/null 2>&1
  mv -f .deps/iso8859_4.Tpo .deps/iso8859_4.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_5.lo -MD -MP -MF .deps/iso8859_5.Tpo -c -o iso8859_5.lo `test -f './enc/iso8859_5.c' || echo './'`./enc/iso8859_5.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_5.lo -MD -MP -MF .deps/iso8859_5.Tpo -c ./enc/iso8859_5.c  -fPIC -DPIC -o .libs/iso8859_5.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_5.lo -MD -MP -MF .deps/iso8859_5.Tpo -c ./enc/iso8859_5.c -o iso8859_5.o >/dev/null 2>&1
  mv -f .deps/iso8859_5.Tpo .deps/iso8859_5.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_6.lo -MD -MP -MF .deps/iso8859_6.Tpo -c -o iso8859_6.lo `test -f './enc/iso8859_6.c' || echo './'`./enc/iso8859_6.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_6.lo -MD -MP -MF .deps/iso8859_6.Tpo -c ./enc/iso8859_6.c  -fPIC -DPIC -o .libs/iso8859_6.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_6.lo -MD -MP -MF .deps/iso8859_6.Tpo -c ./enc/iso8859_6.c -o iso8859_6.o >/dev/null 2>&1
  mv -f .deps/iso8859_6.Tpo .deps/iso8859_6.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_7.lo -MD -MP -MF .deps/iso8859_7.Tpo -c -o iso8859_7.lo `test -f './enc/iso8859_7.c' || echo './'`./enc/iso8859_7.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_7.lo -MD -MP -MF .deps/iso8859_7.Tpo -c ./enc/iso8859_7.c  -fPIC -DPIC -o .libs/iso8859_7.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_7.lo -MD -MP -MF .deps/iso8859_7.Tpo -c ./enc/iso8859_7.c -o iso8859_7.o >/dev/null 2>&1
  mv -f .deps/iso8859_7.Tpo .deps/iso8859_7.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_8.lo -MD -MP -MF .deps/iso8859_8.Tpo -c -o iso8859_8.lo `test -f './enc/iso8859_8.c' || echo './'`./enc/iso8859_8.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_8.lo -MD -MP -MF .deps/iso8859_8.Tpo -c ./enc/iso8859_8.c  -fPIC -DPIC -o .libs/iso8859_8.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_8.lo -MD -MP -MF .deps/iso8859_8.Tpo -c ./enc/iso8859_8.c -o iso8859_8.o >/dev/null 2>&1
  mv -f .deps/iso8859_8.Tpo .deps/iso8859_8.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_9.lo -MD -MP -MF .deps/iso8859_9.Tpo -c -o iso8859_9.lo `test -f './enc/iso8859_9.c' || echo './'`./enc/iso8859_9.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_9.lo -MD -MP -MF .deps/iso8859_9.Tpo -c ./enc/iso8859_9.c  -fPIC -DPIC -o .libs/iso8859_9.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_9.lo -MD -MP -MF .deps/iso8859_9.Tpo -c ./enc/iso8859_9.c -o iso8859_9.o >/dev/null 2>&1
  mv -f .deps/iso8859_9.Tpo .deps/iso8859_9.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_10.lo -MD -MP -MF .deps/iso8859_10.Tpo -c -o iso8859_10.lo `test -f './enc/iso8859_10.c' || echo './'`./enc/iso8859_10.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_10.lo -MD -MP -MF .deps/iso8859_10.Tpo -c ./enc/iso8859_10.c  -fPIC -DPIC -o .libs/iso8859_10.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_10.lo -MD -MP -MF .deps/iso8859_10.Tpo -c ./enc/iso8859_10.c -o iso8859_10.o >/dev/null 2>&1
  mv -f .deps/iso8859_10.Tpo .deps/iso8859_10.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_11.lo -MD -MP -MF .deps/iso8859_11.Tpo -c -o iso8859_11.lo `test -f './enc/iso8859_11.c' || echo './'`./enc/iso8859_11.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_11.lo -MD -MP -MF .deps/iso8859_11.Tpo -c ./enc/iso8859_11.c  -fPIC -DPIC -o .libs/iso8859_11.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_11.lo -MD -MP -MF .deps/iso8859_11.Tpo -c ./enc/iso8859_11.c -o iso8859_11.o >/dev/null 2>&1
  mv -f .deps/iso8859_11.Tpo .deps/iso8859_11.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_13.lo -MD -MP -MF .deps/iso8859_13.Tpo -c -o iso8859_13.lo `test -f './enc/iso8859_13.c' || echo './'`./enc/iso8859_13.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_13.lo -MD -MP -MF .deps/iso8859_13.Tpo -c ./enc/iso8859_13.c  -fPIC -DPIC -o .libs/iso8859_13.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_13.lo -MD -MP -MF .deps/iso8859_13.Tpo -c ./enc/iso8859_13.c -o iso8859_13.o >/dev/null 2>&1
  mv -f .deps/iso8859_13.Tpo .deps/iso8859_13.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_14.lo -MD -MP -MF .deps/iso8859_14.Tpo -c -o iso8859_14.lo `test -f './enc/iso8859_14.c' || echo './'`./enc/iso8859_14.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_14.lo -MD -MP -MF .deps/iso8859_14.Tpo -c ./enc/iso8859_14.c  -fPIC -DPIC -o .libs/iso8859_14.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_14.lo -MD -MP -MF .deps/iso8859_14.Tpo -c ./enc/iso8859_14.c -o iso8859_14.o >/dev/null 2>&1
  mv -f .deps/iso8859_14.Tpo .deps/iso8859_14.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c -o iso8859_15.lo `test -f './enc/iso8859_15.c' || echo './'`./enc/iso8859_15.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c ./enc/iso8859_15.c  -fPIC -DPIC -o .libs/iso8859_15.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_15.lo -MD -MP -MF .deps/iso8859_15.Tpo -c ./enc/iso8859_15.c -o iso8859_15.o >/dev/null 2>&1
  mv -f .deps/iso8859_15.Tpo .deps/iso8859_15.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c -o iso8859_16.lo `test -f './enc/iso8859_16.c' || echo './'`./enc/iso8859_16.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c ./enc/iso8859_16.c  -fPIC -DPIC -o .libs/iso8859_16.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT iso8859_16.lo -MD -MP -MF .deps/iso8859_16.Tpo -c ./enc/iso8859_16.c -o iso8859_16.o >/dev/null 2>&1
  mv -f .deps/iso8859_16.Tpo .deps/iso8859_16.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c -o euc_tw.lo `test -f './enc/euc_tw.c' || echo './'`./enc/euc_tw.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c ./enc/euc_tw.c  -fPIC -DPIC -o .libs/euc_tw.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT euc_tw.lo -MD -MP -MF .deps/euc_tw.Tpo -c ./enc/euc_tw.c -o euc_tw.o >/dev/null 2>&1
  mv -f .deps/euc_tw.Tpo .deps/euc_tw.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c -o euc_kr.lo `test -f './enc/euc_kr.c' || echo './'`./enc/euc_kr.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c ./enc/euc_kr.c  -fPIC -DPIC -o .libs/euc_kr.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT euc_kr.lo -MD -MP -MF .deps/euc_kr.Tpo -c ./enc/euc_kr.c -o euc_kr.o >/dev/null 2>&1
  mv -f .deps/euc_kr.Tpo .deps/euc_kr.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c -o big5.lo `test -f './enc/big5.c' || echo './'`./enc/big5.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c ./enc/big5.c  -fPIC -DPIC -o .libs/big5.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT big5.lo -MD -MP -MF .deps/big5.Tpo -c ./enc/big5.c -o big5.o >/dev/null 2>&1
  mv -f .deps/big5.Tpo .deps/big5.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c -o gb18030.lo `test -f './enc/gb18030.c' || echo './'`./enc/gb18030.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c ./enc/gb18030.c  -fPIC -DPIC -o .libs/gb18030.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT gb18030.lo -MD -MP -MF .deps/gb18030.Tpo -c ./enc/gb18030.c -o gb18030.o >/dev/null 2>&1
  mv -f .deps/gb18030.Tpo .deps/gb18030.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c -o koi8_r.lo `test -f './enc/koi8_r.c' || echo './'`./enc/koi8_r.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c ./enc/koi8_r.c  -fPIC -DPIC -o .libs/koi8_r.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT koi8_r.lo -MD -MP -MF .deps/koi8_r.Tpo -c ./enc/koi8_r.c -o koi8_r.o >/dev/null 2>&1
  mv -f .deps/koi8_r.Tpo .deps/koi8_r.Plo
  /bin/sh ./libtool  --tag=CC   --mode=compile /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c -o cp1251.lo `test -f './enc/cp1251.c' || echo './'`./enc/cp1251.c
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c ./enc/cp1251.c  -fPIC -DPIC -o .libs/cp1251.o
  libtool: compile:  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include -fPIC -MT cp1251.lo -MD -MP -MF .deps/cp1251.Tpo -c ./enc/cp1251.c -o cp1251.o >/dev/null 2>&1
  mv -f .deps/cp1251.Tpo .deps/cp1251.Plo
  /bin/sh ./libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC -version-info 2:0:0 -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o libonig.la -rpath /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib regerror.lo regparse.lo regext.lo regcomp.lo regexec.lo reggnu.lo regenc.lo regsyntax.lo regtrav.lo regversion.lo st.lo regposix.lo regposerr.lo unicode.lo ascii.lo utf8.lo utf16_be.lo utf16_le.lo utf32_be.lo utf32_le.lo euc_jp.lo sjis.lo iso8859_1.lo iso8859_2.lo iso8859_3.lo iso8859_4.lo iso8859_5.lo iso8859_6.lo iso8859_7.lo iso8859_8.lo iso8859_9.lo iso8859_10.lo iso8859_11.lo iso8859_13.lo iso8859_14.lo iso8859_15.lo iso8859_16.lo euc_tw.lo euc_kr.lo big5.lo gb18030.lo koi8_r.lo cp1251.lo
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -shared  -fPIC -DPIC  .libs/regerror.o .libs/regparse.o .libs/regext.o .libs/regcomp.o .libs/regexec.o .libs/reggnu.o .libs/regenc.o .libs/regsyntax.o .libs/regtrav.o .libs/regversion.o .libs/st.o .libs/regposix.o .libs/regposerr.o .libs/unicode.o .libs/ascii.o .libs/utf8.o .libs/utf16_be.o .libs/utf16_le.o .libs/utf32_be.o .libs/utf32_le.o .libs/euc_jp.o .libs/sjis.o .libs/iso8859_1.o .libs/iso8859_2.o .libs/iso8859_3.o .libs/iso8859_4.o .libs/iso8859_5.o .libs/iso8859_6.o .libs/iso8859_7.o .libs/iso8859_8.o .libs/iso8859_9.o .libs/iso8859_10.o .libs/iso8859_11.o .libs/iso8859_13.o .libs/iso8859_14.o .libs/iso8859_15.o .libs/iso8859_16.o .libs/euc_tw.o .libs/euc_kr.o .libs/big5.o .libs/gb18030.o .libs/koi8_r.o .libs/cp1251.o   -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib    -Wl,-soname -Wl,libonig.so.2 -o .libs/libonig.so.2.0.0
  libtool: link: (cd ".libs" && rm -f "libonig.so.2" && ln -s "libonig.so.2.0.0" "libonig.so.2")
  libtool: link: (cd ".libs" && rm -f "libonig.so" && ln -s "libonig.so.2.0.0" "libonig.so")
  libtool: link: ar cru .libs/libonig.a  regerror.o regparse.o regext.o regcomp.o regexec.o reggnu.o regenc.o regsyntax.o regtrav.o regversion.o st.o regposix.o regposerr.o unicode.o ascii.o utf8.o utf16_be.o utf16_le.o utf32_be.o utf32_le.o euc_jp.o sjis.o iso8859_1.o iso8859_2.o iso8859_3.o iso8859_4.o iso8859_5.o iso8859_6.o iso8859_7.o iso8859_8.o iso8859_9.o iso8859_10.o iso8859_11.o iso8859_13.o iso8859_14.o iso8859_15.o iso8859_16.o euc_tw.o euc_kr.o big5.o gb18030.o koi8_r.o cp1251.o
  libtool: link: ranlib .libs/libonig.a
  libtool: link: ( cd ".libs" && rm -f "libonig.la" && ln -s "../libonig.la" "libonig.la" )
  sed -e 's,[@]datadir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/share,g' -e 's,[@]datarootdir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/share,g' -e 's,[@]PACKAGE_VERSION[@],5.9.6,g' -e 's,[@]prefix[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6,g' -e 's,[@]exec_prefix[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6,g' -e 's,[@]libdir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib,g' -e 's,[@]includedir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include,g' < oniguruma.pc.in > oniguruma.pc
  make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  Making all in sample
  make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT encode.o -MD -MP -MF .deps/encode.Tpo -c -o encode.o encode.c
  mv -f .deps/encode.Tpo .deps/encode.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o encode encode.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/encode encode.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT listcap.o -MD -MP -MF .deps/listcap.Tpo -c -o listcap.o listcap.c
  mv -f .deps/listcap.Tpo .deps/listcap.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o listcap listcap.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/listcap listcap.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT names.o -MD -MP -MF .deps/names.Tpo -c -o names.o names.c
  mv -f .deps/names.Tpo .deps/names.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o names names.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/names names.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT posix.o -MD -MP -MF .deps/posix.Tpo -c -o posix.o posix.c
  mv -f .deps/posix.Tpo .deps/posix.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o posix posix.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/posix posix.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT simple.o -MD -MP -MF .deps/simple.Tpo -c -o simple.o simple.c
  mv -f .deps/simple.Tpo .deps/simple.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o simple simple.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/simple simple.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT sql.o -MD -MP -MF .deps/sql.Tpo -c -o sql.o sql.c
  mv -f .deps/sql.Tpo .deps/sql.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o sql sql.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/sql sql.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT syntax.o -MD -MP -MF .deps/syntax.Tpo -c -o syntax.o syntax.c
  mv -f .deps/syntax.Tpo .deps/syntax.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o syntax syntax.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/syntax syntax.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  /usr/local/gcc/5.2.0-1/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include  -I/usr/local/libtool/2.4.6-1/include -I/global/apps/bioinf/galaxy/bin/openldap-2.4.45/include -I/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/include/sasl -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include/python2.7 -I/global/apps/bioinf/galaxy/bin/Python-2.7.13/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/openssl/1.0.2-1/usr/include -I/usr/local/zlib/1.2.8-4/include -I/usr/local/sqlite/3.15.1-1/include -I/usr/local/libedit/20160903-3.1-1/include -I/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/include -I/usr/local/pcre/8.38-1/include -I/usr/local/expat/2.1.1-1/include -I/usr/local/curl/7.41.0-1/include -I/usr/local/tcl/8.6.1-2/include -I/usr/local/flex/2.6.0-1/include -I/usr/local/bison/3.0.4-1/include -I/usr/local/bzip2/1.0.6-3/include  -fPIC -MT crnl.o -MD -MP -MF .deps/crnl.Tpo -c -o crnl.o crnl.c
  mv -f .deps/crnl.Tpo .deps/crnl.Po
  /bin/sh ../libtool --tag=CC   --mode=link /usr/local/gcc/5.2.0-1/bin/gcc  -fPIC  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib -o crnl crnl.o ../libonig.la
  libtool: link: /usr/local/gcc/5.2.0-1/bin/gcc -fPIC -o .libs/crnl crnl.o  -L/usr/local/libtool/2.4.6-1/lib -L/global/apps/bioinf/galaxy/bin/openldap-2.4.45/lib -L/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/lib -L/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib -L/usr/local/readline/6.3-2/lib -L/usr/local/ncurses/5.9-1/lib -L/usr/local/openssl/1.0.2-1/usr/lib -L/usr/local/zlib/1.2.8-4/lib -L/usr/local/sqlite/3.15.1-1/lib -L/usr/local/libedit/20160903-3.1-1/lib -L/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/lib -L/usr/local/pcre/8.38-1/lib -L/usr/local/expat/2.1.1-1/lib -L/usr/local/curl/7.41.0-1/lib -L/usr/local/tcl/8.6.1-2/lib -L/usr/local/flex/2.6.0-1/lib -L/usr/local/bison/3.0.4-1/lib -L/usr/local/bzip2/1.0.6-3/lib ../.libs/libonig.so -Wl,-rpath -Wl,/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
  make[1]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  Executing: make install
  Making install in .
  make[1]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/bin" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/bin"
   /usr/bin/install -c onig-config '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/bin'
  test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib"
   /bin/sh ./libtool   --mode=install /usr/bin/install -c   libonig.la '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib'
  libtool: install: /usr/bin/install -c .libs/libonig.so.2.0.0 /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.so.2.0.0
  libtool: install: (cd /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib && { ln -s -f libonig.so.2.0.0 libonig.so.2 || { rm -f libonig.so.2 && ln -s libonig.so.2.0.0 libonig.so.2; }; })
  libtool: install: (cd /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib && { ln -s -f libonig.so.2.0.0 libonig.so || { rm -f libonig.so && ln -s libonig.so.2.0.0 libonig.so; }; })
  libtool: install: /usr/bin/install -c .libs/libonig.lai /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.la
  libtool: install: /usr/bin/install -c .libs/libonig.a /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.a
  libtool: install: chmod 644 /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.a
  libtool: install: ranlib /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.a
  libtool: finish: PATH="/usr/local/libtool/2.4.6-1/bin:/usr/local/gcc/5.2.0-1/bin:/usr/local/autoconf/2.69-2_CentOS6/bin:/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/node_modules/.bin:/gpfs1/data/galaxy_server/galaxy-dev/.venv/bin:/global/apps/bioinf/galaxy/bin/openldap-2.4.45/bin:/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/bin:/global/apps/bioinf/galaxy/bin/Python-2.7.13/bin:/usr/local/ncurses/5.9-1/bin:/usr/local/openssl/1.0.2-1/usr/bin:/usr/local/sqlite/3.15.1-1/bin:/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/bin:/usr/local/git/2.10.1-1/bin:/usr/local/pcre/8.38-1/bin:/usr/local/expat/2.1.1-1/bin:/usr/local/curl/7.41.0-1/bin:/usr/local/tcl/8.6.1-2/bin:/usr/local/flex/2.6.0-1/bin:/usr/local/bison/3.0.4-1/bin:/usr/local/grid-engine-tools/0.8.0-1/bin:/usr/local/jdk/jdk1.8.0_74/bin:/usr/local/uge/8.5.5-1/bin/lx-amd64:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lpp/mmfs/bin:/usr/local/bzip2/1.0.6-3/bin:/sbin" ldconfig -n /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  ----------------------------------------------------------------------
  Libraries have been installed in:
     /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
  
  If you ever happen to want to link against installed libraries
  in a given directory, LIBDIR, you must either use libtool, and
  specify the full pathname of the library, or use the `-LLIBDIR'
  flag during linking and do at least one of the following:
     - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
       during execution
     - add LIBDIR to the `LD_RUN_PATH' environment variable
       during linking
     - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
     - have your system administrator add LIBDIR to `/etc/ld.so.conf'
  
  See any operating system documentation about shared libraries for
  more information, such as the ld(1) and ld.so(8) manual pages.
  ----------------------------------------------------------------------
  test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include"
   /usr/bin/install -c -m 644 oniguruma.h oniggnu.h onigposix.h '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include'
  test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/pkgconfig" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/pkgconfig"
   /usr/bin/install -c -m 644 oniguruma.pc '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/pkgconfig'
  make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  make[1]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
  Making install in sample
  make[1]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
  make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
  make[2]: Nothing to be done for `install-exec-am'.
  make[2]: Nothing to be done for `install-data-am'.
  make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
  make[1]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
  Executing: autoreconf -i
  configure.ac:14: warning: macro `AM_PROG_AR' not found in library
  fatal: Not a git repository (or any of the parent directories): .git
  fatal: Not a git repository (or any of the parent directories): .git
  libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
  libtoolize: copying file 'config/ltmain.sh'
  libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'.
  libtoolize: copying file 'config/m4/libtool.m4'
  libtoolize: copying file 'config/m4/ltoptions.m4'
  libtoolize: copying file 'config/m4/ltversion.m4'
  configure.ac:14: warning: macro `AM_PROG_AR' not found in library
  fatal: Not a git repository (or any of the parent directories): .git
  fatal: Not a git repository (or any of the parent directories): .git
  configure.ac:14: error: possibly undefined macro: AM_PROG_AR
        If this token and others are legitimate, please use m4_pattern_allow.
        See the Autoconf documentation.
  autoreconf: /usr/local/autoconf/2.69-2_CentOS6/bin/autoconf failed with exit status: 1
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-4BZXbj/jq/setup.py", line 123, in <module>
      'Programming Language :: Python :: 3.5',
    File "/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/setuptools/__init__.py", line 129, in setup
      return distutils.core.setup(**attrs)
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/core.py", line 151, in setup
      dist.run_commands()
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 953, in run_commands
      self.run_command(cmd)
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/wheel/bdist_wheel.py", line 204, in run
      self.run_command('build')
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/cmd.py", line 326, in run_command
      self.distribution.run_command(command)
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/command/build.py", line 127, in run
      self.run_command(cmd_name)
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/cmd.py", line 326, in run_command
      self.distribution.run_command(command)
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 972, in run_command
      cmd_obj.run()
    File "/tmp/pip-install-4BZXbj/jq/setup.py", line 41, in run
      self._build_libjq()
    File "/tmp/pip-install-4BZXbj/jq/setup.py", line 64, in _build_libjq
      ["make"],
    File "/tmp/pip-install-4BZXbj/jq/setup.py", line 79, in _build_lib
      run_command(command)
    File "/tmp/pip-install-4BZXbj/jq/setup.py", line 76, in run_command
      subprocess.check_call(args, cwd=lib_dir)
    File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/subprocess.py", line 186, in check_call
      raise CalledProcessError(retcode, cmd)
  subprocess.CalledProcessError: Command '['autoreconf', '-i']' returned non-zero exit status 1
  
  ----------------------------------------
  Failed building wheel for jq
  Running setup.py clean for jq
Failed to build jq
Installing collected packages: jq
  Running setup.py install for jq ... error
    Complete output from command /gpfs1/data/galaxy_server/galaxy-dev/.venv/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-4BZXbj/jq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-Ei_g_y/install-record.txt --single-version-externally-managed --compile --install-headers /gpfs1/data/galaxy_server/galaxy-dev/.venv/include/site/python2.7/jq:
    running install
    running build
    running build_ext
    Executing: ./configure CFLAGS=-fPIC --prefix=/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6
    checking for a BSD-compatible install... /usr/bin/install -c
    checking whether build environment is sane... yes
    checking for a thread-safe mkdir -p... /bin/mkdir -p
    checking for gawk... gawk
    checking whether make sets $(MAKE)... yes
    checking for gcc... /usr/local/gcc/5.2.0-1/bin/gcc
    checking whether the C compiler works... yes
    checking for C compiler default output file name... a.out
    checking for suffix of executables...
    checking whether we are cross compiling... no
    checking for suffix of object files... o
    checking whether we are using the GNU C compiler... yes
    checking whether /usr/local/gcc/5.2.0-1/bin/gcc accepts -g... yes
    checking for /usr/local/gcc/5.2.0-1/bin/gcc option to accept ISO C89... none needed
    checking for style of include used by make... GNU
    checking dependency style of /usr/local/gcc/5.2.0-1/bin/gcc... gcc3
    checking build system type... x86_64-unknown-linux-gnu
    checking host system type... x86_64-unknown-linux-gnu
    checking how to print strings... printf
    checking for a sed that does not truncate output... /bin/sed
    checking for grep that handles long lines and -e... /bin/grep
    checking for egrep... /bin/grep -E
    checking for fgrep... /bin/grep -F
    checking for ld used by /usr/local/gcc/5.2.0-1/bin/gcc... /usr/bin/ld
    checking if the linker (/usr/bin/ld) is GNU ld... yes
    checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
    checking the name lister (/usr/bin/nm -B) interface... BSD nm
    checking whether ln -s works... yes
    checking the maximum length of command line arguments... 3458764513820540925
    checking whether the shell understands some XSI constructs... yes
    checking whether the shell understands "+="... yes
    checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
    checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
    checking for /usr/bin/ld option to reload object files... -r
    checking for objdump... objdump
    checking how to recognize dependent libraries... pass_all
    checking for dlltool... no
    checking how to associate runtime and link libraries... printf %s\n
    checking for ar... ar
    checking for archiver @FILE support... @
    checking for strip... strip
    checking for ranlib... ranlib
    checking command to parse /usr/bin/nm -B output from /usr/local/gcc/5.2.0-1/bin/gcc object... ok
    checking for sysroot... no
    checking for mt... no
    checking if : is a manifest tool... no
    checking how to run the C preprocessor... /usr/local/gcc/5.2.0-1/bin/gcc -E
    checking for ANSI C header files... yes
    checking for sys/types.h... yes
    checking for sys/stat.h... yes
    checking for stdlib.h... yes
    checking for string.h... yes
    checking for memory.h... yes
    checking for strings.h... yes
    checking for inttypes.h... yes
    checking for stdint.h... yes
    checking for unistd.h... yes
    checking for dlfcn.h... yes
    checking for objdir... .libs
    checking if /usr/local/gcc/5.2.0-1/bin/gcc supports -fno-rtti -fno-exceptions... no
    checking for /usr/local/gcc/5.2.0-1/bin/gcc option to produce PIC... -fPIC -DPIC
    checking if /usr/local/gcc/5.2.0-1/bin/gcc PIC flag -fPIC -DPIC works... yes
    checking if /usr/local/gcc/5.2.0-1/bin/gcc static flag -static works... no
    checking if /usr/local/gcc/5.2.0-1/bin/gcc supports -c -o file.o... yes
    checking if /usr/local/gcc/5.2.0-1/bin/gcc supports -c -o file.o... (cached) yes
    checking whether the /usr/local/gcc/5.2.0-1/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
    checking whether -lc should be explicitly linked in... no
    checking dynamic linker characteristics... GNU/Linux ld.so
    checking how to hardcode library paths into programs... immediate
    checking whether stripping libraries is possible... yes
    checking if libtool supports shared libraries... yes
    checking whether to build shared libraries... yes
    checking whether to build static libraries... yes
    checking whether make sets $(MAKE)... (cached) yes
    checking for ANSI C header files... (cached) yes
    checking for stdlib.h... (cached) yes
    checking for string.h... (cached) yes
    checking for strings.h... (cached) yes
    checking sys/time.h usability... yes
    checking sys/time.h presence... yes
    checking for sys/time.h... yes
    checking for unistd.h... (cached) yes
    checking sys/times.h usability... yes
    checking sys/times.h presence... yes
    checking for sys/times.h... yes
    checking size of int... 4
    checking size of short... 2
    checking size of long... 8
    checking for an ANSI C-conforming const... yes
    checking whether time.h and sys/time.h may both be included... yes
    checking for size_t... yes
    checking for working alloca.h... yes
    checking for alloca... yes
    checking for working memcmp... yes
    checking for prototypes... yes
    checking for variable length prototypes and stdarg.h... yes
    configure: creating ./config.status
    config.status: creating Makefile
    config.status: creating onig-config
    config.status: creating sample/Makefile
    config.status: creating config.h
    config.status: config.h is unchanged
    config.status: executing depfiles commands
    config.status: executing libtool commands
    config.status: executing default commands
    Executing: make
    make  all-recursive
    make[1]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    Making all in .
    make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    sed -e 's,[@]datadir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/share,g' -e 's,[@]datarootdir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/share,g' -e 's,[@]PACKAGE_VERSION[@],5.9.6,g' -e 's,[@]prefix[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6,g' -e 's,[@]exec_prefix[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6,g' -e 's,[@]libdir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib,g' -e 's,[@]includedir[@],/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include,g' < oniguruma.pc.in > oniguruma.pc
    make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    Making all in sample
    make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
    make[2]: Nothing to be done for `all'.
    make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
    make[1]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    Executing: make install
    Making install in .
    make[1]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/bin" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/bin"
     /usr/bin/install -c onig-config '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/bin'
    test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib"
     /bin/sh ./libtool   --mode=install /usr/bin/install -c   libonig.la '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib'
    libtool: install: /usr/bin/install -c .libs/libonig.so.2.0.0 /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.so.2.0.0
    libtool: install: (cd /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib && { ln -s -f libonig.so.2.0.0 libonig.so.2 || { rm -f libonig.so.2 && ln -s libonig.so.2.0.0 libonig.so.2; }; })
    libtool: install: (cd /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib && { ln -s -f libonig.so.2.0.0 libonig.so || { rm -f libonig.so && ln -s libonig.so.2.0.0 libonig.so; }; })
    libtool: install: /usr/bin/install -c .libs/libonig.lai /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.la
    libtool: install: /usr/bin/install -c .libs/libonig.a /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.a
    libtool: install: chmod 644 /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.a
    libtool: install: ranlib /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/libonig.a
    libtool: finish: PATH="/usr/local/libtool/2.4.6-1/bin:/usr/local/gcc/5.2.0-1/bin:/usr/local/autoconf/2.69-2_CentOS6/bin:/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/node_modules/.bin:/gpfs1/data/galaxy_server/galaxy-dev/.venv/bin:/global/apps/bioinf/galaxy/bin/openldap-2.4.45/bin:/global/apps/bioinf/galaxy/bin/cyrus-sasl-2.1.25/bin:/global/apps/bioinf/galaxy/bin/Python-2.7.13/bin:/usr/local/ncurses/5.9-1/bin:/usr/local/openssl/1.0.2-1/usr/bin:/usr/local/sqlite/3.15.1-1/bin:/global/apps/bioinf/galaxy/bin/postgresql-9.6.2/bin:/usr/local/git/2.10.1-1/bin:/usr/local/pcre/8.38-1/bin:/usr/local/expat/2.1.1-1/bin:/usr/local/curl/7.41.0-1/bin:/usr/local/tcl/8.6.1-2/bin:/usr/local/flex/2.6.0-1/bin:/usr/local/bison/3.0.4-1/bin:/usr/local/grid-engine-tools/0.8.0-1/bin:/usr/local/jdk/jdk1.8.0_74/bin:/usr/local/uge/8.5.5-1/bin/lx-amd64:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lpp/mmfs/bin:/usr/local/bzip2/1.0.6-3/bin:/sbin" ldconfig -n /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
    ----------------------------------------------------------------------
    Libraries have been installed in:
       /tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib
    
    If you ever happen to want to link against installed libraries
    in a given directory, LIBDIR, you must either use libtool, and
    specify the full pathname of the library, or use the `-LLIBDIR'
    flag during linking and do at least one of the following:
       - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
         during execution
       - add LIBDIR to the `LD_RUN_PATH' environment variable
         during linking
       - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
       - have your system administrator add LIBDIR to `/etc/ld.so.conf'
    
    See any operating system documentation about shared libraries for
    more information, such as the ld(1) and ld.so(8) manual pages.
    ----------------------------------------------------------------------
    test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include"
     /usr/bin/install -c -m 644 oniguruma.h oniggnu.h onigposix.h '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/include'
    test -z "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/pkgconfig" || /bin/mkdir -p "/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/pkgconfig"
     /usr/bin/install -c -m 644 oniguruma.pc '/tmp/pip-install-4BZXbj/jq/onig-install-5.9.6/lib/pkgconfig'
    make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    make[1]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6'
    Making install in sample
    make[1]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
    make[2]: Entering directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
    make[2]: Nothing to be done for `install-exec-am'.
    make[2]: Nothing to be done for `install-data-am'.
    make[2]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
    make[1]: Leaving directory `/tmp/pip-install-4BZXbj/jq/onig-5.9.6/sample'
    Executing: autoreconf -i
    configure.ac:14: warning: macro `AM_PROG_AR' not found in library
    fatal: Not a git repository (or any of the parent directories): .git
    fatal: Not a git repository (or any of the parent directories): .git
    libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
    libtoolize: copying file 'config/ltmain.sh'
    libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'.
    libtoolize: copying file 'config/m4/libtool.m4'
    libtoolize: copying file 'config/m4/ltoptions.m4'
    libtoolize: copying file 'config/m4/ltversion.m4'
    configure.ac:14: warning: macro `AM_PROG_AR' not found in library
    fatal: Not a git repository (or any of the parent directories): .git
    fatal: Not a git repository (or any of the parent directories): .git
    configure.ac:14: error: possibly undefined macro: AM_PROG_AR
          If this token and others are legitimate, please use m4_pattern_allow.
          See the Autoconf documentation.
    autoreconf: /usr/local/autoconf/2.69-2_CentOS6/bin/autoconf failed with exit status: 1
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-4BZXbj/jq/setup.py", line 123, in <module>
        'Programming Language :: Python :: 3.5',
      File "/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/setuptools/__init__.py", line 129, in setup
        return distutils.core.setup(**attrs)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/core.py", line 151, in setup
        dist.run_commands()
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/gpfs1/data/galaxy_server/galaxy-dev/.venv/lib/python2.7/site-packages/setuptools/command/install.py", line 61, in run
        return orig.install.run(self)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/command/install.py", line 563, in run
        self.run_command('build')
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/command/build.py", line 127, in run
        self.run_command(cmd_name)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/distutils/dist.py", line 972, in run_command
        cmd_obj.run()
      File "/tmp/pip-install-4BZXbj/jq/setup.py", line 41, in run
        self._build_libjq()
      File "/tmp/pip-install-4BZXbj/jq/setup.py", line 64, in _build_libjq
        ["make"],
      File "/tmp/pip-install-4BZXbj/jq/setup.py", line 79, in _build_lib
        run_command(command)
      File "/tmp/pip-install-4BZXbj/jq/setup.py", line 76, in run_command
        subprocess.check_call(args, cwd=lib_dir)
      File "/global/apps/bioinf/galaxy/bin/Python-2.7.13/lib/python2.7/subprocess.py", line 186, in check_call
        raise CalledProcessError(retcode, cmd)
    subprocess.CalledProcessError: Command '['autoreconf', '-i']' returned non-zero exit status 1
    
    ----------------------------------------
Command "/gpfs1/data/galaxy_server/galaxy-dev/.venv/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-4BZXbj/jq/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-Ei_g_y/install-record.txt --single-version-externally-managed --compile --install-headers /gpfs1/data/galaxy_server/galaxy-dev/.venv/include/site/python2.7/jq" failed with error code 1 in /tmp/pip-install-4BZXbj/jq/

Querying large ifles.

I always thought of jq as a great tool for querying large JSON files without reading them into memory: stream processor.

How can I can use this Python binding to query a large 120MB JSON file without reading it into memory?

jq does not properly install its peer dependencies (and relies on a third-party library in setup.py)

Steps to reproduce

Create a virtual env and install jq:

python3 -m venv .
bin/pip install jq

Try to import the requests library:

bin/python
Python 3.8.10 (default, May  4 2021, 03:06:52)
[Clang 12.0.0 (clang-1200.0.32.29)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import requests
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'requests'

This is causing problems when we are trying to use jq as a peer dependency in our OS project (plone.org) and when we build Docker containers.

I think it is generally not recommended to use a third-party library in setup.py if I am not mistaken. Since this can cause all kinds of problems because you never know how people might install your package and which versions they might use.

Thanks for sharing the library with the OS world! We would love to continue to use jq in our OS project. Though, it would be really important to fix this IMHO (not only for us but for everyone who uses the library).

Unexpected list of lists returned for 'keys'

Hi there,

I stumped across a bit unexpected behavior when trying to get keys of a dictionary:

In [2]: jq.all("keys",{"test1":"1234","test2":2345})
Out[2]: [['test1', 'test2']]

while 'jq' on bash gives just the list of keys:

$ echo '{"test1":"1234","test2":2345}' | jq 'keys'
[
  "test1",
  "test2"
]

The same discrepancy is present also for keys_unsorted.
Seen for (jq==1.1.2).