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flower-plot's Issues

error with example

After successfully installed y tried the package.
As i understand i make the example as an python script (flower.py) and run with the python version I installed flower_plot but I get the error TypeError: 'type' object is not subscriptable, see below:
ggreif@UBM12:~$ cat > flower.py

some data:

genome_to_data = {
'FakeGenome0': {'color': (0.500, 0.000, 1.000), 'shell': 48, 'unique': 0},
'FakeGenome1': {'color': (0.452, 0.073, 0.999), 'shell': 53, 'unique': 4},
'FakeGenome2': {'color': (0.398, 0.159, 0.996), 'shell': 95, 'unique': 0}
}

import matplotlib.pyplot as plt
from flower_plot import flower_plot

flower_plot(genome_to_data=genome_to_data, n_core=788)
plt.tight_layout()
plt.show()
^C
ggreif@UBM12:~$ python3.8 flower.py
Traceback (most recent call last):
File "flower.py", line 9, in
from flower_plot import flower_plot
File "/home/ggreif/.local/lib/python3.8/site-packages/flower_plot/init.py", line 4, in
from .flower_plot import flower_plot
File "/home/ggreif/.local/lib/python3.8/site-packages/flower_plot/flower_plot.py", line 35, in
genome_to_data: dict[str:dict],
TypeError: 'type' object is not subscriptable

installation

Hi, I am trying to install using pip and I have two error (first I try with pip but i think is linked to old version of python), then I update python3 to python3.11 and I use pip3, but I have a second error:
pip install git+https://github.com/MrTomRod/flower-plot.git
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Defaulting to user installation because normal site-packages is not writeable
Collecting git+https://github.com/MrTomRod/flower-plot.git
Cloning https://github.com/MrTomRod/flower-plot.git to /tmp/pip-req-build-Jh1Yhd
Running command git clone -q https://github.com/MrTomRod/flower-plot.git /tmp/pip-req-build-Jh1Yhd
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python2.7 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-Jh1Yhd/setup.py'"'"'; file='"'"'/tmp/pip-req-build-Jh1Yhd/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-CIQG_L
cwd: /tmp/pip-req-build-Jh1Yhd/
Complete output (5 lines):
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-req-build-Jh1Yhd/setup.py", line 2, in
import pathlib
ImportError: No module named pathlib
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ggreif@UBM12:~$ pip3 install git+https://github.com/MrTomRod/flower-plot.git
Traceback (most recent call last):
File "/usr/bin/pip3", line 11, in
load_entry_point('pip==20.0.2', 'console_scripts', 'pip3')()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 490, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2854, in load_entry_point
return ep.load()
^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2445, in load
return self.resolve()
^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2451, in resolve
module = import(self.module_name, fromlist=['name'], level=0)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pip/_internal/cli/main.py", line 10, in
from pip._internal.cli.autocompletion import autocomplete
File "/usr/lib/python3/dist-packages/pip/_internal/cli/autocompletion.py", line 9, in
from pip._internal.cli.main_parser import create_main_parser
File "/usr/lib/python3/dist-packages/pip/_internal/cli/main_parser.py", line 7, in
from pip._internal.cli import cmdoptions
File "/usr/lib/python3/dist-packages/pip/_internal/cli/cmdoptions.py", line 19, in
from distutils.util import strtobool
ModuleNotFoundError: No module named 'distutils.util'

can you helpme?
thanks

install complete but can't save svg

Hi, I can install flower_plot and i trying test using the example modified to save the plots:

import os
from itertools import cycle
from unittest import TestCase
import matplotlib.pyplot as plt
from flower_plot import flower_plot

SAVE = True
OUTDIR = "/home/ggreif/output"

CORE = 788
DATA = {
    'NIZO2256': {'color': (0.5, 0.0, 1.0), 'shell': 48, 'unique': 0},
    'NIZO2257': {'color': (0.45294117647058824, 0.07385252747487396, 0.9993170601430229), 'shell': 53, 'unique': 4},
    'NIZO2259': {'color': (0.39803921568627454, 0.1594757912099808, 0.9967953249171991), 'shell': 95, 'unique': 0},
    'NIZO2260': {'color': (0.3431372549019608, 0.24391372010837714, 0.9924205096719357), 'shell': 87, 'unique': 2},
    'NIZO2262a': {'color': (0.28823529411764703, 0.3265387128400833, 0.9862007473534026), 'shell': 98, 'unique': 0},
    'NIZO2264': {'color': (0.23333333333333334, 0.40673664307580015, 0.9781476007338057), 'shell': 90, 'unique': 1},
    'NIZO2457': {'color': (0.17843137254901964, 0.4839114241003015, 0.9682760409157589), 'shell': 88, 'unique': 0},
    'NIZO2484': {'color': (0.12352941176470589, 0.5574894393428855, 0.9566044195004408), 'shell': 102, 'unique': 0},
    'NIZO2494': {'color': (0.06862745098039214, 0.6269238058941065, 0.9431544344712774), 'shell': 88, 'unique': 0},
    'NIZO2535': {'color': (0.013725490196078438, 0.6916984393193699, 0.9279510898565747), 'shell': 92, 'unique': 0},
    'NIZO2741': {'color': (0.04117647058823526, 0.7513318895568732, 0.9110226492460883), 'shell': 83, 'unique': 0},
    'NIZO2776': {'color': (0.09607843137254901, 0.8053809193888326, 0.8924005832479478), 'shell': 45, 'unique': 0},
    'NIZO2801': {'color': (0.15098039215686276, 0.8534437988883159, 0.8721195109836108), 'shell': 69, 'unique': 1},
    'NIZO2806': {'color': (0.19803921568627447, 0.8896040127307095, 0.853443798888316), 'shell': 68, 'unique': 0},
    'NIZO2814': {'color': (0.2529411764705882, 0.9256376597815562, 0.8301840308155507), 'shell': 86, 'unique': 0},
    'NIZO2830': {'color': (0.307843137254902, 0.9547913248866443, 0.8053809193888326), 'shell': 92, 'unique': 0},
    'NIZO1836': {'color': (0.36274509803921573, 0.9768483177596007, 0.7790805745256704), 'shell': 106, 'unique': 7},
    'NIZO1838': {'color': (0.41764705882352937, 0.9916446955107427, 0.7513318895568734), 'shell': 55, 'unique': 0},
    'NIZO1839': {'color': (0.4725490196078431, 0.9990704811844932, 0.7221864503320093), 'shell': 55, 'unique': 1},
    'NIZO1840': {'color': (0.5274509803921568, 0.9990704811844932, 0.6916984393193701), 'shell': 61, 'unique': 0},
    'NIZO2766': {'color': (0.5823529411764705, 0.9916446955107427, 0.6599245348787227), 'shell': 82, 'unique': 0},
    'CIP104448': {'color': (0.6372549019607843, 0.9768483177596008, 0.6269238058941066), 'shell': 72, 'unique': 0},
    'NIZO1837a': {'color': (0.692156862745098, 0.9547913248866443, 0.5927576019625549), 'shell': 87, 'unique': 0},
    'NIZO2258': {'color': (0.7470588235294118, 0.9256376597815563, 0.5574894393428855), 'shell': 53, 'unique': 0},
    'NIZO2485': {'color': (0.8019607843137255, 0.8896040127307095, 0.5211848828765852), 'shell': 102, 'unique': 2},
    'NIZO2855': {'color': (0.8490196078431373, 0.8534437988883159, 0.4892929169339235), 'shell': 85, 'unique': 0},
    'NIZO2802': {'color': (0.9039215686274509, 0.8053809193888327, 0.45124405704532283), 'shell': 77, 'unique': 1},
    'NIZO2877': {'color': (0.9588235294117646, 0.7513318895568735, 0.41235631747390367), 'shell': 85, 'unique': 0},
    'NIZO2889': {'color': (1.0, 0.6916984393193701, 0.3727019919909141), 'shell': 84, 'unique': 0},
    'NIZO2891': {'color': (1.0, 0.6269238058941065, 0.3323547994796596), 'shell': 92, 'unique': 0},
    'NIZO2896': {'color': (1.0, 0.5574894393428858, 0.29138974688932473), 'shell': 85, 'unique': 0},
    'NIZO3400': {'color': (1.0, 0.4839114241003016, 0.24988298979423082), 'shell': 59, 'unique': 0},
    'NIZO2753': {'color': (1.0, 0.40673664307580004, 0.20791169081775923), 'shell': 52, 'unique': 0},
    'NIZO2757': {'color': (1.0, 0.3265387128400838, 0.1655538761841302), 'shell': 81, 'unique': 0},
    'NIZO2726a': {'color': (1.0, 0.24391372010837745, 0.12288829066471427), 'shell': 85, 'unique': 0},
    'NIZO2831': {'color': (1.0, 0.1594757912099809, 0.07999425118854168), 'shell': 92, 'unique': 0},
    'NIZO2263': {'color': (1.0, 0.07385252747487431, 0.03695149938914507), 'shell': 91, 'unique': 0},
    'NIZO2029': {'color': (1.0, 1.2246467991473532e-16, 6.123233995736766e-17), 'shell': 89, 'unique': 10}
}


def generate_data(n: int) -> dict[str:dict]:
    data_generator = cycle(DATA.values())
    return {f'FakeGenome{i}': next(data_generator) for i in range(n)}


def show_or_save(title: str):
    plt.tight_layout()
    if SAVE:
        plt.savefig(f'{OUTDIR}/{title}.svg')
    else:
        plt.show()


class Test(TestCase):
    def setUp(self) -> None:
        plt.close()

    def tearDown(self) -> None:
        plt.close()

    def test_flower_plot_no_data(self):
        with self.assertRaises(AssertionError):
            flower_plot(genome_to_data={}, n_core=CORE)

    def test_flower_plot_bad_data(self):
        with self.assertRaises(KeyError):
            flower_plot(genome_to_data={'genome1': [1]}, n_core=CORE)
        with self.assertRaises(KeyError):
            flower_plot(genome_to_data={'genome1': {'color': (0, 1, 1)}}, n_core=CORE)

    def test_flower_plot_rotate(self):
        flower_plot(genome_to_data=DATA, n_core=CORE)
        show_or_save('rotate')

    def test_flower_plot_no_rotate(self):
        flower_plot(
            genome_to_data=DATA, n_core=CORE,
            rotate_genome=False, rotate_shell=False, rotate_unique=False
        )
        show_or_save('no_rotate')

    def test_flower_plot_different_genomes(self):
        for n in [1, 2, 3, 4, 10, 15, 20, 50, 100, 200]:
            flower_plot(genome_to_data=generate_data(n), n_core=CORE)
            plt.suptitle(f'Generated {n} datapoints')
            show_or_save(f'generate_{n}')

But I can't see any plot in ouput dir (/home/ggreif/output already exist). I haven't error messages. any idea?

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