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calf

Chemical Exchange Saturation Transfer (CEST) MRI Analysis Software

ccfviewer

Simple application for viewing and slicing AI common coordinate framework atlas data

cdmffd-image-registration

Composed Directly Manipulated Free Form Deformation Image Registration

cest

Codes and materials for CEST MRI data analysis

cest-7pool-lorentzianlineshapemodel-fitting-in-c

Program to generate CEST maps by fitting a 7-pool Lorentzian-lineshape model to densely-sampled brain CEST-MRI data

cest-adaptivedenoising

cest-mrf

Chemical Exchange Saturation Transfer (CEST) MR-Fingerprinting

cest-processing-routines-in-matlab

A collection of sub-routines written in MATLAB for visualizing and processing of densely-sampled CEST-MRI brain data

cest_eval

cest_eval_local

CEST-MRI analysis toolbox adapted for Bruker scanners from cest-sources/CEST_EVAL

cest_mri

A library of functions to perform quantitative analysis of CEST MRI / NMR data

cestmri.mat

CESTMRI.mat is a MATLAB library for the simulation and analysis of CEST MRI data

crexchangerate

d_rpca

Deformable Groupwise Image Registration using Low-Rank and Sparse Decomposition

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

deepbrainipp

Automated Brain Structures Segmentation Framework

deepcest

deepcestanddeeparex

denoising-cest-mri

Matlab-based code for denoising MRI-CEST images for improving CEST contrast quantification and pH mapping based on iopamidol.

digital-image-processing-and-analysis

All codes written by me in my Digital Image Processing & Analysis course.

dsi-studio

Diffusion MRI analysis tool

elastix

Official elastix repository

export_fig

A MATLAB toolbox for exporting publication quality figures

extractbrain

Matlab function/app to extract rodent brain in MRI data based on PCNN algorithm.

fid-a

Toolbox for simulation and processing of in-vivo magnetic resonance spectroscopy (MRS) data

fmriprep-rodents

fMRIPrep for Rodents

gannet

Gannet is a free, open-source MATLAB-based software toolkit for analyzing edited 1H magnetic resonance spectroscopy (MRS) data.

gift

Group ICA/IVA software (MATLAB)

image-registration

A MATLAB library/toolbox providing access to image registration suitable for use with medical images.

image_registration_n_splitting

Using different methods to realize image registration