A R package to correlate drug distribution with tumor tissue types in mass spectrometry imaging (MSI) data.
CorreDrugTumorMSI provides a complete analysis pipeline to analyze untargeted drug mass spectrometry imaging (MSI) data. The main functionality of the package includes: preprocessing of MSI data, identified unsupervised clusters, create a drug spatial map, quantitative analysis of identified clusters and drug spatial map and selection of spatially relevant molecular ions from the identified clusters. For further details see the package vignette
- Install HomogenMSI: In the shell type
library(devtools)
install_github("mridulaprasad/CorrDrugTumorMSI", dependencies = TRUE)
- To additionally build the vignette the previous command should include build_vignettes = TRUE
library(devtools)
install_github("mridulaprasad/CorrDrugTumorMSI", dependencies = TRUE, build_vignettes = TRUE)
- Load the package: In shell type
library(CorrDrugTumorMSI)