I work as a PhD student at the University of Turin, Italy in the Complex Systems for Life Sciences program. I'm a bioinformatician, working with everything genomic and transcriptomic related.
I'm an author and the maintainer for (almost) all packages in my laboratory's organization.
If you want to learn more about me, take a look at my ABOUT page. It contains more information on what I do, as well as my Curriculum Vitae and publication lists.
I really like collaborating with others. If you want to collaborate, check the CONTRIBUTING files in the repository for the project you want to contribute to, or contact me directly!
I administrate bioinfo.ds, a bioniformatics-centered community on Discord.
All my contact information lives in my linktree. I strive to keep it up-to-date!
This is a (possibly incomplete) list of my finished, abandoned (๐) and current (๐ง) projects. I look at this when I want to feel good about myself.
- Kerblam! and Kerblam usage examples: a Rust tool / project management system that makes your life easier when dealing with data analysis.
- Metasplit: a Python tool to break up (large) CSV files column-wise based on an external metadata file.
- Panid: a Python tool to convert between different IDs (e.g. ensembl, HGNC, etc...).
- Fast Cohen's D: a small Rust tool to calculate Cohen's D.
- BioTEA: a containerized Python tool to analysi microarray expression.
- ๐ง The Data Stewardship Knowledgebase: an aggregator of links related to data stewardship, open science and data management in general.
- ๐ The Handbook was meant to be the place to go to when looking for code style guides, how-tos and more.
- ๐ง Mimir: a policy to handle data for a research group with little resources in a FAIR way.
- A tiny guide to Make, which converts to this website.
- The code for my blog, which you can read here.
- ๐ The Data Myr specification, the precursor to Mimir.
- Programming notes some notes and exercises on the usage of R.
- The Membrane Transport Protein database, a database of transporters.
- ICT-Bib, a database of papers about transporters.
- Bonsai a Python library to handle Tree like data structures. It's very easy to use.
- ๐ง Transportome Profiler, the main analysis of my PhD thesis.
- ๐ง Data analysis project structure: an analysis on the structure of data analysis projects.
- Turin author network: an analysis of the co-authorship network between the authors of the university of Turin.
- Code used in my Master thesis.
- A Typst paper template to jumpstart paper writing in Typst.
- A Latex paper template to jumpstart paper writing in Latex.
- ๐ง Code of the paper for Kerblam!
- My dotfiles
- Milton: my Discord bot.
- ๐ Chip 8 implementation in Rust (which does not really work).