mourisl / poa Goto Github PK

For example, to implement edit distance, set the parameters to:
_matScore = 0 ; _misScore = -1 ; _insScore = -1 ; _delScore = _delStartScore = _delEndScore = -1 ;

Then, set the program's input to:

char s1[] = "ACGTGTACAGTTGAC" ;
char s2[] = "AGGTACACGTTAC" ;
char s3[] = "AGTGTCACGTTGAC" ;
char s4[] = "ACGTGTACATTGAC" ;
char test[] = "AGGAGTGCATTTACG";

Use s1-s4 to create a poa diagram：

poa.Init(s1, strlen(s1)) ;
printf( "%d\n", poa.Add(s2, strlen(s2))) ;
printf( "%d\n", poa.Add(s3, strlen(s3))) ;
printf( "%d\n", poa.Add(s4, strlen(s4))) ;
poa.VisualizePOA() ;

So far, I think everything is correct.

But when the test sequence is compared with the poa diagram, the score and path output by the program do not match, and I think the score is wrong.
As shown below：

the output is:

Obviously, the scores and comparison paths are not consistent

I would greatly appreciate your response.
Thank you very much.