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r-intro-bioinformatics

Intro course to the R language for bioinformatics. Based on the Software Carpentry methodology.

r-linear

Course notes on linear models in R, old repository. Please use:

r-linear-abacbs2018

A brief introduction to Linear Models, at the Bioconductor Training Day following ABACBS 2018

r-more

Further topics in R.

r-shinyintro-mbp

https://monashbioinformaticsplatform.github.io/R-ShinyIntro-MBP/

refold-2

Protein Refolding Record Database Revamp

report_template_script

Monash Bioinformatics Platform report templates markdown (and Rmd) to HTML

rmit_mbp_scworkshop_oct2019

Links to slides from todays workshop.

rnaseq-de-analysis-with-r

rnaseq-form

rnasik-pipe

RNAsik - more than just a pipeline

rnasik-rest

RESTful API implementation for the RNAsik-pipe command line program

rocker-ultra

Containerised RStudio with bells+whistles for HPC and everywhere

rseqc

fork of RSeQC python RNAseq metrics suit of tools

seqfish-hack

seqFISH+ data in tidy format for a mini-hackathon

single-cell-workshop

Half day workshop with 10x

slurry

A web accessible tool for looking at a Slurm queue and the associated priorities

snap-tb

tcpseq

trimviz

Visualisation of trimming or soft-clipping of short sequence reads

varistran

R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data