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abcreg

Automating approximate Bayesian computation by local linear regression

analysis

Programs for the (pre-NGS-era) analysis of population-genetic data.

ancestry-recording-experiments

ancestry_graph

(Yet another) prototype of a new method for ancestry update

backpacking_food

DIY meals for backpacking

baldwin_brown_2014

Code from Baldwin-Brown, Long, and Thornton (2014) Mol Biol Evol

bedtricks

Collections of tips/tricks/commands related to using bedtools

bigdataformats

Tutorial on programming or "big data"/bioinformatics

bioconda-recipes

Conda recipes for the bioconda channel.

burden

Rcpp functions for performing "burden" tests.

datascience

Materials related to a proposed class in data science for PhD students.

demes-rs

rust tools for the demes ecosystem

dod_experiments

Rust DOD experiments

dotfiles

Config files for various programs.

dummy

Crash test dummy repo for this numpy/msprime issue.

dynamic-ts

Dynamic tree sequences for forward simulations

edge_buffering_explanation

Pure Python description of efficient edge buffering

efficient_edge_recording

Example of efficient edge recording in forward simulation

example_tskit_rust_simulations

Examples of forward-time simulations written using tskit-rust

fdr_perm

fedora_notes

Notes on Fedora Linux setup

fixedcrossoverinterval

Example of extending fwdpy11 to add a new GeneticMapUnit type

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations

fwdpp_tsms

fwdpy

forward-time population genetic simulation in python

fwdpy11

Forward-time simulation in Python using fwdpp

fwdpy11_arg_example

Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.

fwdpy11_frequency_tracker

fwdpy11_infinitesimal

fwdpy11_statistical_tests

Suite of statistical tests for fwdpy11.