This repository includes all sorts of scripts and files used in analysis of in situ sequencing data. It's suposed to be a "working" repository for common consultant. For scripts used in published works, please, check other repositories of Moldia organization.

• BinningClustering: characterizes genetically specific regions of a tissue
• Colocalization: checks for colocalization of the desired genes
• DensityEstimate:
• ImageAnalysis:
• Others:
• ROI reorganized:
• SingleCellAnalysis:
• Utilities:
• Visualization:
• deprecated: some scripts that are not functional anymore for current use
• lib: functions needed for the correct functioning of all the scripts found in this repository