Giter Club home page Giter Club logo

macroecology_glm-treemodel's Introduction

Species Distribution Model for five European tree species

A simple Species Distribution Model (SDM) applying a generalized linear model (GLM) in the R environment. Point occurences of five European tree species are linked to spatial data of three environmental variables (annuam mean temperature plus precipitation, elevation above sealevel). \

Some conceptual problems are present due to computational reasons: (i) the area limiting shapefile (retreived form the coastline shapefile) is larger than the area covered by the actual point occurences, leading to false peseudo-absences; (ii) the pseudo-absences were generated bbased on grid centroids, but centroid resolution was 100x100 km insteadt of 1x1 km given in the point occurence dataset.

Datasets

Point occurences
Mauri, A., Strona, G. & San-Miguel-Ayanz, J. (2017). EU-Forest, a high-resolution tree occurrence dataset for Europe. Scientific data, 4, 1โ€“8.\

Precipitation and temperature data Must be added to the "data" folder on own device
[Chelsa - Climate data http://chelsa-climate.org/]
Temperature data: [https://os.zhdk.cloud.switch.ch/envicloud/chelsa/chelsa_V1/climatologies/bio/CHELSA_bio10_01.tif]
Precipitation data: [https://os.zhdk.cloud.switch.ch/envicloud/chelsa/chelsa_V1/climatologies/bio/CHELSA_bio10_12.tif]\

Elevation data
GMTED - Digital elevation data [https://topotools.cr.usgs.gov/gmted_viewer/viewer.html]

macroecology_glm-treemodel's People

Contributors

modhd avatar

Watchers

 avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.