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MOnte CArlo SimulationS of Ionized Nebulae, Version 3.0

3D Monte Carlo X-Ray Enabled Photoionization and Dust Radiative Transfer Code

Copyright (C) 2007 Barbara Ercolano

How to compile:

make mocassin
make mocassinWarm
make mocassinOutput
make mocassinPlot

What typical packages required to compile mocassin on linux:

gcc openmpi

or

intel/mpi

How to clean:

make clean

How to run:

mpirun -np N ./mocassin

where N is number of processors for parallel computing.

How to run mpirun on a supercomputer:

In the batches folder of mocassin-models, there are running batch examples for different job scheduling systems.

To submit a batch file on the Portable Batch System (PBS):

 qsub mocassin_run.job

To submit a batch file on the Sun Grid Engine (SGE):

 qsub mocassin_run.job

To submit a batch file on the Simple Linux Utility for Resource Management (SLURM):

 sbatch mocassin_run.sh

• Ercolano, B., Young, P. R., Drake, J. J., & Raymond, J. C, "X-Ray Enabled MOCASSIN: A Three-dimensional Code for Photoionized Media", ApJS, 175, 534-542, 2008

• Ercolano, B., Drake, J. J., Raymond, J. C., & Clarke, C. C., "X-Ray-Irradiated Protoplanetary Disk Atmospheres. I. Predicted Emission-Line Spectrum and Photoevaporation", ApJ, 688, 398-407, 2008

• Ercolano, B., Clarke, C. J., & Drake, J. J., "X-Ray Irradiated Protoplanetary Disk Atmospheres. II. Predictions from Models in Hydrostatic Equilibrium", ApJ, 699, 1639, 2009