mjbetti / roger_hi-c_processing_pipeline Goto Github PK
View Code? Open in Web Editor NEWA basic workflow to generate a processed .hic matrix of 3D genome contacts from unaligned raw reads (FASTQs). Based roughly off of the Hi-C processing guidelines specified by the 4D Nucleome Data Coordination and Integration Center (https://data.4dnucleome.org/resources/data-analysis/hi_c-processing-pipeline).