mit-lcp / bhi-bsn-challenge Goto Github PK

we should update the readme to provide more detail about the challenge and to describe the repository content.

I don't have a password on my database and get the error below:
psycopg2.OperationalError: fe_sendauth: no password supplied

For password what can I put,below I didn't write any password.
Create a database connection
user = 'postgress'
password = ''
host = 'localhost'
dbname = 'mimic'
schema = 'mimic'

From: https://embs.papercept.net/conferences/conferences/BSN18/program/BSN18_ProgramAtAGlanceWeb.html#wek1n1

08:50-10:20 Regular Session WeAT2
Treasure Island F
Google Sponsored Big Data Challenge Final Reporting Workshop I

Coffee Break

10:35-11:35 Regular Session WeNT2
Treasure Island F
Google Sponsored Big Data Challenge Final Reporting Workshop II

8:50-9:20 Datathon report, Background on Research Question, MIMIC III, Introduce Judges, Acknowledge Sponsors
9:20-10:20: Groups Present
10:20-35: Coffee!
10:35-11:20: More Groups Present,
11:20-11:35: Closing Remarks. Refer people to closing ceremony for winners

We are up against lunch, so letting people out early wouldn't be the worst thing in the world.

Contingencies:

• Very few groups show up
• Too many groups show up

At some point the [email protected] address seems to have broken, which means emails are bouncing :/

I'm sorry to have to inform you that your message could not
be delivered to one or more recipients. It's attached below.

For further assistance, please send mail to <postmaster>.

If you do so, please include this problem report. You can
delete your own text from the attached returned message.


<[email protected]>: 554 5.1.1 <[email protected]>: Recipient address rejected: User unknown in local recipient table

Reporting-MTA: dns; dmz-mailsec-scanner-1.mit.edu
Arrival-Date: Wed, 28 Feb 2018 15:03:48 -0500

Final-Recipient: rfc822; [email protected]
Status: 5.1.1
Action: failed
Last-Attempt-Date: Wed, 28 Feb 2018 15:03:48 -0500
Diagnostic-Code: smtp; 554 5.1.1 <[email protected]>: Recipient address rejected: User unknown in local recipient table

From: https://embs.papercept.net/conferences/conferences/BSN18/program/BSN18_ProgramAtAGlanceWeb.html#mok1n1

09:35-11:05 Regular Session MoAT2
Treasure Island F
Google Sponsored Biomedical Big Data Challenge MIT MIMIC-III Jump Star Workshop I

11:20-12:51 Regular Session MoBT2
Treasure Island F
Google Sponsored Biomedical Big Data Challenge MIT MIMIC-III Jump Star Workshop II

It says two sessions, but I think it's effectively one with a coffee break.

Suggestion for program:

9:35-10am: One presentation on MIMIC/Datathon; Trying to get everyone the demo dataset
10 -11:05am Workshop: running through the example code/analysis
11:05-11:20am: Coffee
11:20-Noon: Continue with workshop, steer people into groups to form possible team, and formulating more advanced analyses.
Noon-12:50p: Help with new concepts, questions about MIMIC, SQL questions, stats questions.

Contingencies:

• Not very many people show up
• Too many people show up
• Room is not conducive for people working on laptops
• Most people have not been approved for MIMIC access
• No/poor WiFi
• Only WiFi for presentation console

I would suggest the following:

1. Had you used MIMIC before?

2. Did you use the demo(s)?

3. What software did you use in the end?

4. What other resources did you use?

5. What resources would have you liked to have access to?

6. Did you attend the Jump Start session on Monday?

7. How will you use the Google Cloud credits?

8. What did you like about the datathon?

9. What could have we done better?

10. Other suggestions/comments.

at the moment, numbers (0=Monday) are displayed on the x-axis of the sample plots. it would be better to display the name of the week on chronological order.

to wrap up the challenge we should consider:

• email to challenge participants
• email to conference attendees
• article in IEEE spectrum
• blog article
• announcement at https://mimic.physionet.org/events/bhibsn-challenge/
• share presentations and/or code from projects

anything else?

the demo notebook should more clearly outline:

• how to install MIMIC
• how to use the MIMIC Code Repo to generate views (icustay_detail, oasis, etc).