mirasrael / tmdataloader Goto Github PK

These instructions:

Go to tMDataLoader repository and run following commands:
psql -d transmart -f sql/postgres/migrations.sql
psql -d transmart -f sql/postgres/permissions.sql
psql -d transmart -f sql/postgres/procedures.sql

do not work.
This works:

cd sql/postgres
psql -d transmart -f migrations.sql
...

Hello,
I noticed that after applying the DB patches for Postgres (migrations.sql etc...) the
https://github.com/transmart/transmart-data upload process of sample datasets do not work anymore.
I mean the

make -C samples/{oracle,postgres} load_clinical_GSE8581
make -C samples/{oracle,postgres} load_ref_annotation_GSE8581
make -C samples/{oracle,postgres} load_expression_GSE8581

stuff

Please ask if you need more information, I will relaunch the whole process.

In the tutorial v1.5, it is mentioned that genotype calls can be downloaded using a calls text file.
In v2.1, I see no mention of SNP data...

So my question is: is-it possible, useful, recommended to upload a whole GWAS genotype data ?
Thanks