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Acycle: Time-series analysis software for research and education

Home Page: https://acycle.org/

MATLAB 99.54% C 0.06% M 0.39%

matlab series-analysis spectral-analysis correlation-coefficient macos

acycle's Introduction

Acycle is a time-series analysis software for research and education

Highlights

A fully implemented graphical user interface (GUI) facilitates operator use

Acycle runs either in the MATLAB environment or as a stand-alone application on Mac and Windows

Please cite

Mingsong Li, Linda A. Hinnov, Lee R. Kump, 2019. Acycle: Time-series analysis software for paleoclimate research and education. Computers & Geosciences. 127: 12-22. https://doi.org/10.1016/j.cageo.2019.02.011.

Wiki: Table of Content

What they say

Dr. James G. Ogg (Purdue University, USA):

"His Acycle software will become the standard tool for time-scale applications by all international workers."
Dr. J. Fred Read (Virginia Tech, USA):

"It is truly an amazing contribution to the geosciences community. As someone who has spent much of the last 50 years trying to understand cyclic carbonates on shallow platforms, and having been involved with my students in some of the early work on stratigraphic modelling of the effects of Milankovitch forcing of carbonate platform stratigraphy, I was blown away by the power of the Acycle software. ... You should all feel very proud of this contribution. It opens up much needed access to these powerful tools for a wide audience in the sedimentary geology and paleoclimate community. Thanks again for all your efforts. A really marvellous job."
Read More

Has been used in

Li, M., Hinnov, L.A., Huang, C., Ogg, J.G., 2018. Nature Commun. https://doi.org/10.1038/s41467-018-03454-y
Shi, J., Jin, Z., Liu, Q., Zhang, R., Huang, Z., 2019. Glob. Planet. Change 174, 115-126. https://doi.org/10.1016/j.gloplacha.2019.01.001
Kochhann, M.V.L., Cagliari, J., Kochhann, K.G.D., Franco, D.R., 2020. Geochemistry, Geophysics, Geosystems, https://doi.org/10.1029/2019GC008676
Read More

Download

Contact

Mingsong Li, Peking University. Oct. 16, 2023
E-mail: msli {at} pku.edu.cn; limingsonglms {at} gmail.com

Website: https://acycle.org/

Please give it a " ⭐️ Star" if you like this software 😁 🌹. (top right corner of this page)

Abstract

Acycle is a comprehensive, but "user-friendly" software package for analysis of time-series designed for (but not limited to) climate research and education.
Acycle runs either in the MATLAB environment or as a stand-alone application on Mac and Windows.
It is an open-source package and is available free of charge.
- Acycle provides data preparation tools, curve fitting, detrending procedures with multiple options available to track or remove secular trends, and integrates various power spectral analysis approaches for detection and tracking of periodic signals.
- Acycle also provides a toolbox that evaluates astronomical signals in climate series and estimates the most likely sedimentation rate by maximizing the correlation coefficient between power spectra of an astronomical solution and a paleoclimate series.
- Many of the functions are specific to paleoclimatology and cyclostratigraphy and are not found in standard, statistical packages.

Acycle Graphical User Interface (GUI)

Acycle menu

Acycle insolation toolbox

Mean insolation map from March 21 to Sept. 23 for the past 100 kyr (1-100) at 50-80°N using the Laskar et al. (2004) solutions. The calculate uses a solar constant of 1365 w/m^2.

Evolutionary FFT of the astronomical solution.

2π multi-taper method power spectrum of the gamma ray series is shown with 20% median-smoothed spectrum, background AR(1) model, and 90%, 95%, 99%, and 99.9% confidence levels.

Examples #1 Curve fitting | detrending | smoothing

Examples #2 Power spectral analysis

Examples #3 Evolutionary power spectral analysis and Wavelet analysis

Examples #4 COCO of sedimentation rate evaluation

Examples #5 eCOCO of sedimentation rate evaluation

Examples #6 Filtering

Examples #7 Tuning

Examples #8 DYNOT sedimentary noise model

Examples #9 Smoothed bootstrap

Examples #10 Coherence and phase

Examples #11 Plot Pro

Examples #12 Image profile

Examples #13 Plot Digitizer

Wiki: Table of Content

1. Copyright
2. References

3. Getting Started

4. Graphical User Interface

What they say

Dr. J. Fred Read (Virginia Tech, USA)

I am writing to express my appreciation for all the hard work and thought that has gone into the development of the Acycle software program. It is truly an amazing contribution to the geosciences community. As someone who has spent much of the last 50 years trying to understand cyclic carbonates on shallow platforms, and having been involved with my students in some of the early work on stratigraphic modelling of the effects of Milankovitch forcing of carbonate platform stratigraphy, I was blown away by the power of the Acycle software.

In the old days we used in house programs from our geophysicist Cahit Coruh, and recently I have used Analyseries, kSpectra and Timefrq43, moving from Dos to Windows to Mac, jumping from one to the other to get the job done. Acycle has done away with the need for this, and I have been impressed with how very user friendly the program is – an indication of the tremendous effort and thought that has gone into putting this together.

You should all feel very proud of this contribution. It opens up much needed access to these powerful tools for a wide audience in the sedimentary geology and paleoclimate community. Thanks again for all your efforts. A really marvellous job.
Dr. James Ogg (Purdue University, USA):

"Mingsong Li's Acycle software enables us to quickly analyze the potential of new outcrops and boreholes, and then to determine the sedimentation rates and elapsed time. His Acycle software will become the standard tool for time-scale applications by all international workers."
Dr. Paul E. Olsen (Columbia University, USA):

Not only is this software powerful and effective, it is also simple to use and therefore benefits researchers and at all levels within the paleoclimatology community, from novices to experts.
Dr. Arsenio Muñoz Jiménez (University of Zaragoza, Spain):

"Thank you very much and congratulations for the acycle software. I am using it and it is very very useful and interesting."
Dr. Marco Franceschi (University of Padova, Italy):

Dr. Li’s software is being immensely valuable to my work. Some of the stratigraphic series I am studying display a prominent cyclicity, but were deposited in contexts characterized by relevant changes in sedimentation rates and often lack accurate geochronological constraints. Acycle has been designed specifically for dealing with similar cases, by tackling them with a rigorous statistical approach, and therefore is providing an invaluable tool for their investigation.
Dr. Xu Yao (Lanzhou University, China):

I am working on cyclostratigraphy and paleoclimate study of ancient strata and rocks (270 million years ago) with assistance from Acycle software. I also introduced this software to my colleagues whose research areas are paleoclimate implications of Quaternary loess (several thousand years ago). My colleagues have given me really good feedbacks about Acycle software.
Dr. Christian Zeeden (IMCCE, Observatoire de Paris, France):

Dr. Li’s software is novel and valuable in this context, especially because it facilitates the easy application of otherwise complex calculations.
Dr. Nicolas R. Thibault (University of Copenhagen, Denmark):

"I’ve been playing a lot with the excellent Acycle package for Matlab that Mingsong developed. Congratulations, this is a very nice interface that simplifies a lot our work and makes it truly faster to analyse a time-series."
Dr. Frits Hilgen (Utrecht University, Netherlands):

"I used it this academic year for the first time in my MSc course on Astronomical climate forcing and time scales as replacement of the outdated Analyseries program. The main advantages of Acycle is that it is very user friendly, has a lot of different options for the statistical analysis of paleoclimate records and in addition first-rate plotting options. For instance you can directly see the trend that you aim to remove and then decide whether you want to continue with it. It is further also very good to see the fast and almost continuous improvement of Acycle, including the processing of reported bugs. And, not unimportantly, also my students were very enthusiastic about Acycle and I now use it now for my own research as well!"

Acycle has been used in

1. Li, M., Hinnov, L.A., Huang, C., Ogg, J.G., 2018. Sedimentary noise and sea levels linked to land–ocean water exchange and obliquity forcing. Nature communications 9, 1004. https://doi.org/10.1038/s41467-018-03454-y
2. Li, M., Kump, L.R., Hinnov, L.A., Mann, M.E., 2018. Tracking variable sedimentation rates and astronomical forcing in Phanerozoic paleoclimate proxy series with evolutionary correlation coefficients and hypothesis testing. Earth and Planetary Science Letters 501, 165-179. https://doi.org/10.1016/j.epsl.2018.08.041
3. Chen, G., Gang, W., Liu, Y., Wang, N., Guo, Y., Zhu, C., Cao, Q., 2019. High-resolution sediment accumulation rate determined by cyclostratigraphy and its impact on the organic matter abundance of the hydrocarbon source rock in the Yanchang Formation, Ordos Basin, China. Marine and Petroleum Geology 103, 1-11. https://doi.org/10.1016/j.marpetgeo.2019.01.044
4. Li, M., Huang, C., Ogg, J., Zhang, Y., Hinnov, L., Wu, H., Chen, Z.-Q., Zou, Z., 2019. Paleoclimate proxies for cyclostratigraphy: Comparative analysis using a Lower Triassic marine section in South China. Earth-Science Reviews. https://doi.org/10.1016/j.earscirev.2019.01.011
5. Shi, J., Jin, Z., Liu, Q., Zhang, R., Huang, Z., 2019. Cyclostratigraphy and astronomical tuning of the middle eocene terrestrial successions in the Bohai Bay Basin, Eastern China. Global and Planetary Change 174, 115-126. https://doi.org/10.1016/j.gloplacha.2019.01.001
6. Lu, Y., Huang, C., Jiang, S., Zhang, J., Lu, Y., Liu, Y., 2019. Cyclic late Katian through Hirnantian glacioeustasy and its control of the development of the organic-rich Wufeng and Longmaxi shales, South China. Palaeogeography, Palaeoclimatology, Palaeoecology. https://doi.org/10.1016/j.palaeo.2019.04.012
7. Zhang, Y., Yi, L., Ogg, J.G., 2019. Pliocene-Pleistocene magneto-cyclostratigraphy of IODP Site U1499 and implications for climate-driven sedimentation in the northern South China Sea. Palaeogeography, Palaeoclimatology, Palaeoecology. https://doi.org/10.1016/j.palaeo.2019.04.030
8. Zhang, R., Jin, Z., Liu, Q., Li, P., Huang, Z., Shi, J., Ge, Y., Du, K., 2019. Astronomical constraints on deposition of the Middle Triassic Chang 7 lacustrine shales in the Ordos Basin, Central China. Palaeogeography, Palaeoclimatology, Palaeoecology. https://doi.org/10.1016/j.palaeo.2019.04.030
9. Zhao, K., Du, X., Lu, Y., Xiong, S., Wang, Y., 2019. Are light-dark coupled laminae in lacustrine shale seasonally controlled? A case study using astronomical tuning from 42.2 to 45.4 Ma in the Dongying Depression, Bohai Bay Basin, eastern China. Palaeogeography, Palaeoclimatology, Palaeoecology 528, 35-49. https://doi.org/10.1016/j.palaeo.2019.04.034
10. Zhang, R., Li, L., Nai, W., Gu, Y., Huang, C., Ogg, J., Li, Q., Lu, C. and Wang, Z., 2019. Astronomical forcing of terrestrial climate recorded in the Pleistocene of the western Tarim Basin, NW China. Palaeogeography, Palaeoclimatology, Palaeoecology.
11. Xu, K., Chen, H., Huang, C., Ogg, J.G., Zhu, J., Lin, S., Yang, D., Zhao, P. and Kong, L., 2019. Astronomical time scale of the Paleogene lacustrine paleoclimate record from the Nanxiang Basin, central China. Palaeogeography, Palaeoclimatology, Palaeoecology, 532, p.109253.
12. ZHONG, Y., CHEN, D., FAN, J., WU, H., FANG, Q. and SHI, M., 2019. Cyclostratigraphic Calibration of the Upper Ordovician (Sandbian–Katian) Pagoda and Linhsiang Formations in the Yichang Area, South China. Acta Geologica Sinica‐English Edition, 93(S3), pp.177-180.
13. Su, Q., Nie, J., Luo, Z., Li, M., Heermance, R. and Garzione, C., 2019. Detection of Strong Precession Cycles from the Late Pliocene Sedimentary Records of Northeastern Tibetan Plateau. Geochemistry, Geophysics, Geosystems.
14. Oehlert, A.M. and Swart, P.K., Rolling Window Regression of δ13C and δ18O Values in Carbonate Sediments: Implications for Source and Diagenesis. The Depositional Record.
Read More - Google Scholar citations
And papers that may use COCO/eCOCO methods

Official website: https://acycle.org
or here: https://github.com/mingsongli/acycle/blob/master/doc/AC_Users_Guide.pdf
or here: Acycle "Help" menu - "Manual",
or here:

  /doc/AC_Users_Guide.pdf

Please give it a " ⭐️ Star" if you like this software 😁 🌹. (top right corner of this page)

acycle's People

Contributors

Stargazers

Watchers

acycle's Issues

Several errors on one machine (due to lack of toolbox?): document required toolboxes

Hi! Here are the first bugs that a student experienced. It looks like in this case it's the lack of the Signal Processing Toolbox.

Running spectral analysis doesn't work:

make basic series ETP La2004 1--1000 (works)
run mtm on series
output of matlab command line:

Error in redconfML (line 69)
[pxx,f] = pmtm(x,nw,nfft);

Error in spectrum>pushbutton17_Callback (line 889)
                [rhoM,
s0M,redconfAR1,redconfML96]=redconfML(datax,dt,nw,nzeropad,linlog,smoothwin,fmax,1);

Error in gui_mainfcn (line 95)
        feval(varargin{:});

Error in spectrum (line 42)
    gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)spectrum('pushbutton17_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating UIControl Callback.

Creating insolation series doesn't work:

make basic series insolation daily La2004 1--1000
warning dialog:
Check time scale input, t must be larger than 0 and less than 249000 ka
no error messages

ESA/wavelet both work as expected

Age scale results in empty plot in stead of dialog box when only age model is selected

click age scale
select an age model, but not a depth series
click ok
empty plot, following error messages on command line

Error using load
File name is empty.

Error in agescale>pushbutton8_Callback (line 303)
    data = load(data_name);

Error in gui_mainfcn (line 95)
        feval(varargin{:});

Error in agescale (line 42)
    gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)agescale('pushbutton8_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating UIControl Callback.

Error using load
File name is empty.

Error in agescale>pushbutton8_Callback (line 303)
    data = load(data_name);

Error in gui_mainfcn (line 95)
        feval(varargin{:});

Error in agescale (line 42)
    gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)agescale('pushbutton8_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating UIControl Callback.

This student has:
windows 10
matlab 9.7 R2019b
matlab toolboxes:

simulink 10.0
statistics and machine learning toolbox 11.6
symbolic math toolbox 8.4
acycle v1.4

I will update when the student manages to install the Signal Processing Toolbox :).

detrending options are cached from previous dialog box

depth series
timeseries > detrending
pick one of the operations, click ok, select it from dropdown, leave window open
select record, open new detrending dialog, select another option, click ok, dropdown doesn't show new correct operation and if you click previously listed one it doesn't perform any operation on the series.

windows 10
matlab ver

-----------------------------------------------------------------------------------------------------
MATLAB Version: 9.6.0.1072779 (R2019a)
MATLAB License Number: 1088092
Operating System: Microsoft Windows Server 2012 R2 Datacenter Version 6.3
(Build 9600)
Java Version: Java 1.8.0_181-b13 with Oracle Corporation Java HotSpot(TM)
64-Bit Server VM mixed mode
-----------------------------------------------------------------------------------------------------
MATLAB                                                Version 9.6
(R2019a)
Simulink                                              Version 9.3
(R2019a)
Bioinformatics Toolbox                                Version 4.12
 (R2019a)
Computer Vision Toolbox                               Version 9.0
(R2019a)
Control System Toolbox                                Version 10.6
 (R2019a)
Curve Fitting Toolbox                                 Version 3.5.9
(R2019a)
DSP System Toolbox                                    Version 9.8
(R2019a)
Data Acquisition Toolbox                              Version 4.0
(R2019a)
Database Toolbox                                      Version 9.1
(R2019a)
Deep Learning Toolbox                                 Version 12.1
 (R2019a)
Econometrics Toolbox                                  Version 5.2
(R2019a)
Financial Toolbox                                     Version 5.13
 (R2019a)
Global Optimization Toolbox                           Version 4.1
(R2019a)
Image Processing Toolbox                              Version 10.4
 (R2019a)
Instrument Control Toolbox                            Version 4.0
(R2019a)
MATLAB Compiler                                       Version 7.0.1
(R2019a)
Mapping Toolbox                                       Version 4.8
(R2019a)
Optimization Toolbox                                  Version 8.3
(R2019a)
Parallel Computing Toolbox                            Version 7.0
(R2019a)
Partial Differential Equation Toolbox                 Version 3.2
(R2019a)
Signal Processing Toolbox                             Version 8.2
(R2019a)
Simscape                                              Version 4.6
(R2019a)
Simscape Multibody                                    Version 6.1
(R2019a)
Simulink Control Design                               Version 5.3
(R2019a)
Spreadsheet Link                                      Version 3.4.1
(R2019a)
Stateflow                                             Version 10.0
 (R2019a)
Statistics and Machine Learning Toolbox               Version 11.5
 (R2019a)
Symbolic Math Toolbox                                 Version 8.3
(R2019a)
System Identification Toolbox                         Version 9.10
 (R2019a)
Wavelet Toolbox                                       Version 5.2
(R2019a)

acycle ver 2.0 (1.4 in command line)

Plot Pro default: don't use dots but just show lines?

The regular plot command plots lines without dots. The Plot Pro options by default plots points as well, but usually when looking at spectra these are a distraction. Perhaps change the default to no dots for plot pro, but allow the user to add them if desired?

Bug in wavelet plots?

I was wondering if its a bug when you plot the wavelets and click on the graph to verify the values ( in the time domain) the pop up on show a different value that that along the y axis.

Bug: Unnecessary data generate in the bootstp file

After clicking the bootstrap button, two files (bootstrap and percentile) are then generated. In each file, multiple column datasets are then generated. Some of them seem to be unnecessary.

Acycle version info in window title is different from command line/MATLAB

A relatively minor issue, but because of this I didn't know which version to report.

When changing the bandpass filter settings, the plots don't zoom consistently

select data
filter
change one of minimum or peak centre

the top plot (the Lomb-Scaigle (how do you write that?) changes the frequency axis accordingly
but the mtm spectrum doesn't change along with it.

this was on a chinese windows 10 computer, running with the matlab runtime. I'm not sure which versions of either were installed.

cross-spectral analysis

Hi there,

I'm using the standalone Windows 2.4.1 version, and the cross-spectral analysis doesn't run. I have selected two evenly spaced time series (CTRL+both series) on the main menu -> Timeserires -> Wavelet, and then the following error appears:

Error in waveletGUI>waveletGUI_OpeningFcn (line 217)

Error in gui_mainfcn (line 220)

Error in waveletGUI (line 42)

Error in AC>menu_waveletGUI_Callback (line 5609)

Error in gui_mainfcn (line 95)

Error in AC (line 94)

Error in matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)AC('menu_waveletGUI_Callback',hObject,eventdata,guidata(hObject))

Error using waitforallfiguresclosed (line 16)
Error while evaluating Menu Callback.

Log transform of negative values

When log-transforming time series with negative values, two unexpected things can happen:

When the "Logarithm" option is selected (resulting in automatic selection of "log10"), no error is thrown, and the original data is displayed twice. Clicking "OK and save data" leads to a new file with name appendix "-" that is a duplicate of the original data. Given the selected options, this is unexpected
When the "log 10" or "ln" option is selected directly, and "OK and save data" is selected, a new file with appendix "-log10" (or "-ln") is generated, which contains imaginary values. This throws a warning in the console Imaginary parts of complex X and/or Y arguments ignored., the histogram breaks, and a corresponding downstream error in the console:

In datatransformationsGUI/updateplot1 (line 564)
In datatransformationsGUI/checkradio (line 507)
In waitforallfiguresclosed (line 16)
Error using datatransformationsGUI/updateplot1 (line 569)
Error using ylim in subplot(2,2,3). Results may have complex values???

Error in datatransformationsGUI/checkradio (line 507)

Error using waitforallfiguresclosed (line 16)
Error while evaluating UIControl Callback.

Contrary to the warning, imaginary parts can lead to NaNs when further analyses are run, e.g. rloess detrending. Trying to log transform negative values should throw an error.

This is on Acycle2.8-Win-Green with Matlab runtime

Why do I get the error 'The procedure entry point could not be located in the dynamic link library api-ms-win-crt-runtime-l1-1-0.dll '

the procedure entry point could not be located in the dynamic link library api-ms-win-crt-runtime-l1-1-0.dll

colormap scale bug

Question:
The last update (acycle 1.2) in the evolutionary spectral analysis does not plot the colormap scale as in old versions.

Wavelet analysis error message

Hi there,

I have just started using the Acycle Matlab version software and have been learning my way through it with the "Example #2: La2004 astronomical solution (ETP)" from the manual guide.

I am stuck at Step 6 where I can't perform the Wavelet analysis on the LR04.

I get the following error message on MATLAB:

Key parameters updated/changed. Re-run wavelet : done
Unrecognized function or variable 'fmin'.
Error in chisquare_inv (line 36)
X = fmin('chisquare_solve',MINN,MAXX,[0,TOLERANCE],P,V);
Error in wave_signif (line 145)
chisquare = chisquare_inv(siglvl,dof(a1))/dof(a1);
Error in wave_readGUI (line 137)
global_signif = wave_signif(variance,dt,scale,1,lag1,-1,dof,mother,param);
Error in waveletGUI>waveletGUI_OpeningFcn (line 436)
wave_readGUI
Error in gui_mainfcn (line 220)
feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});
Error in waveletGUI (line 42)
gui_mainfcn(gui_State, varargin{:});
Error in AC>menu_waveletGUI_Callback (line 8607)
waveletGUI(handles);
Error in gui_mainfcn (line 95)
feval(varargin{:});
Error in AC (line 92)
gui_mainfcn(gui_State, varargin{:});
Error in matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)AC('menu_waveletGUI_Callback',hObject,eventdata,guidata(hObject))
Error while evaluating Menu Callback.

Can anyone help me figure out what I need to do?

Many thanks,
Florent

LAPACK loading error

Home version of Win10, and cannot perform trend analysis, filtering, spectrum analysis, etc

警告: 在为表创建变量名称之前，对文件中的列标题进行了修改，以使其成为有效的 MATLAB 标识符。原始列标题保存在 VariableDescriptions 属性中。
将 'VariableNamingRule' 设置为 'preserve' 以使用原始列标题作为表变量名称。
警告: JavaFrame 图窗属性将在以后的版本中删除。有关详细信息，请参阅 mathworks.com 上的 MATLAB App 的 UI 替代。

位置：AC>AC_OpeningFcn (第 636 行)
位置: gui_mainfcn (第 220 行)
位置: AC (第 92 行)
位置: ac (第 123 行)
错误使用 qr
LAPACK 加载错误:
mllapack.dll: ????????????顣

出错 smooth>unifloess (第 574 行)

出错 smooth>lowess (第 296 行)

出错 smooth (第 176 行)

出错 update_detrend_plot_fig (第 141 行)

出错 prewhiten>prewhiten_lowess_checkbox_Callback (第 236 行)

出错 gui_mainfcn (第 95 行)

出错 prewhiten (第 42 行)

出错 matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)prewhiten('prewhiten_lowess_checkbox_Callback',hObject,eventdata,guidata(hObject))

错误使用 waitforallfiguresclosed (第 16 行)
计算 UIControl Callback 时出错。

AR1 log/linear fit selection not functional

In the robust AR(1) estimation of the MTM spectral analysis, changing the AR(1) best fit model (1 = linear, 2 = log power) has no effect on the fits produced. Regardless of whether the linear or log-power fit is selected, the program appears to be generating a fit to the linear-scaled median-smoothed spectrum.

DYNOT module: a problem with starting the parallel pool

One Acycle user got a problem with starting the parallel pool when using the DYNOT approach.

OS: Windows 10
Acycle version: Acycle v2.2 MatLab version

Error message:

Error in using parpool (line 104)
Not enough input arguments.

Error DYNOS>pushbutton5_Callback (line 422)
            poolobj = parpool('local',numcore);

Error gui_mainfcn (line 95)
        feval(varargin{:});

Error DYNOS (line 46)
    gui_mainfcn(gui_State, varargin{:});

Error
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)DYNOS('pushbutton5_Callback',hObject,eventdata,guidata(hObject))

Solution:

Enter MatLab command window prefdir, you will see an address
Go to the folder C:\Users\xxx\AppData\Roaming\MathWorks\MATLAB\R20XX
Up one level: C:\Users\xxx\AppData\Roaming\MathWorks\MATLAB\
Delete the folder local_cluster_jobs
Restart MatLab and Acycle

Please let me [ limingsonglms{at}gmail{dot}com ] know if this doesn't work.

MacOS 10.15 Catalina and Acycle bug

From users of macOS 10.15 Catalina:

The Acycle installer launcher stops very early.
Then I tried the ‘green’ one. To do that I installed the Matlab runtime (the latest version 2019b for 64 bits) (I tried with 2019a with the same results). When I launch Acycle, I got this error message from a pop-up window:

`---------------------------------------

  Cannot locate a valid install area

`---------------------------------------

And

xxxxx@xxxxx-MacBook-Pro ~ % /Applications/acycle.app/Contents/MacOS/applauncher ; exit;
dyld: Symbol not found: _mecab_get_feature
  Referenced from: /System/Library/PrivateFrameworks/CoreNLP.framework/Versions/A/CoreNLP
  Expected in: /Applications/MATLAB/MATLAB_Runtime/v96/bin/maci64/libmecab.dylib
 in /System/Library/PrivateFrameworks/CoreNLP.framework/Versions/A/CoreNLP
zsh: abort      /Applications/acycle.app/Contents/MacOS/applauncher
 
[Process completed]

demean user interface is unintuitive

Many students struggled to understand the UI of the demean dialog box.

We've worked out that the correct procedure to get output is:

select series
click demean option from menu
mark one or more of the boxes of the analyses (LOESS, demean, linear etc.) you want to do
click OK
inspect plot
select the analysis you want to save from the dropdown menu to save the output

This last step is confusing, people seem to expect that when you click OK the output will be saved. If you select multiple, I think it should just save all versions separately upon clicking OK or perhaps change the word in the OK dialog to something like Plot.

version info omitted since this is the same for all versions we've seen

Default options override not set permanently in dialog boxes (e.g. in insolation)

create insolation time series
change one of the default options and click ok
create a new insolation series

options still show the previously changed values (this is expected)
but results are not using those values but return to the defaults!
(e.g. change 65 degrees to 25, make the series, then click insolation again, it says 25 but generates 65 when you click ok).

This error occurred with all students! And apparently not only with insolation.

but here is the info for the student who helped me report it:
windows 10
matlab 9.7 R2019b
matlab toolboxes:

simulink 10.0
statistics and machine learning toolbox 11.6
symbolic math toolbox 8.4
acycle v1.4

Copying multiple records at once to a subdirectory duplicates the values of the first record

from within acycle, copy multiple different records at once to a new directory

the new copies have the correct names, but all get the values from the first record
This is a pretty major bug, I think :).

windows 10
matlab ver

-----------------------------------------------------------------------------------------------------
MATLAB Version: 9.6.0.1072779 (R2019a)
MATLAB License Number: 1088092
Operating System: Microsoft Windows Server 2012 R2 Datacenter Version 6.3
(Build 9600)
Java Version: Java 1.8.0_181-b13 with Oracle Corporation Java HotSpot(TM)
64-Bit Server VM mixed mode
-----------------------------------------------------------------------------------------------------
MATLAB                                                Version 9.6
(R2019a)
Simulink                                              Version 9.3
(R2019a)
Bioinformatics Toolbox                                Version 4.12
 (R2019a)
Computer Vision Toolbox                               Version 9.0
(R2019a)
Control System Toolbox                                Version 10.6
 (R2019a)
Curve Fitting Toolbox                                 Version 3.5.9
(R2019a)
DSP System Toolbox                                    Version 9.8
(R2019a)
Data Acquisition Toolbox                              Version 4.0
(R2019a)
Database Toolbox                                      Version 9.1
(R2019a)
Deep Learning Toolbox                                 Version 12.1
 (R2019a)
Econometrics Toolbox                                  Version 5.2
(R2019a)
Financial Toolbox                                     Version 5.13
 (R2019a)
Global Optimization Toolbox                           Version 4.1
(R2019a)
Image Processing Toolbox                              Version 10.4
 (R2019a)
Instrument Control Toolbox                            Version 4.0
(R2019a)
MATLAB Compiler                                       Version 7.0.1
(R2019a)
Mapping Toolbox                                       Version 4.8
(R2019a)
Optimization Toolbox                                  Version 8.3
(R2019a)
Parallel Computing Toolbox                            Version 7.0
(R2019a)
Partial Differential Equation Toolbox                 Version 3.2
(R2019a)
Signal Processing Toolbox                             Version 8.2
(R2019a)
Simscape                                              Version 4.6
(R2019a)
Simscape Multibody                                    Version 6.1
(R2019a)
Simulink Control Design                               Version 5.3
(R2019a)
Spreadsheet Link                                      Version 3.4.1
(R2019a)
Stateflow                                             Version 10.0
 (R2019a)
Statistics and Machine Learning Toolbox               Version 11.5
 (R2019a)
Symbolic Math Toolbox                                 Version 8.3
(R2019a)
System Identification Toolbox                         Version 9.10
 (R2019a)
Wavelet Toolbox                                       Version 5.2
(R2019a)

acycle v2.0 in title of screen, 1.4 in matlab command line

Acycle stand-alone version for Windows crashes

Background: Acycle standalone version for Windows + MatLab Runtime

Forwarded Description:

I have been using acycle a lot today and one hour ago I had this message:

Undefined function or variable 'matlabrc'

So I deleted everything and reinstalled it all. It worked for about 10 minutes and then again it doesn't work.

I receive an error message:

Warning: Can't find the resource file 'toolbox\local\hgrc.m' needed by 'c:Program File\... ?\hg.dll'
- Undefined function or variable 'matlabrc'
- Undefined function or variable 'ctfroot' 
- Error in runtimeInitializationChecks (line 23)
- Undefined function or variable 'ctfroot'

I tried to deinstall and reinstall Matlab Runtime and Acycle, even that won't work.

I am not able to install Acycle it anymore (the process of the installation starts and finishes quickly but then the program doesn't start).

Bug in wavelet coherence and cross spectrum analysis

I'm trying to do cross spectrum analysis however according to the manual I'm suppose to select two files and the user interface would change, but after I select the two files the user interface remained the same and it returns with an error message of
请求的数组超过允许的最大变量大小。

出错 wave_readGUI (第 236 行)

出错 waveletGUI>popupmenu1_Callback (第 882 行)

出错 gui_mainfcn (第 95 行)

出错 waveletGUI (第 42 行)

出错 matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)waveletGUI('popupmenu1_Callback',hObject,eventdata,guidata(hObject))

错误使用 waitforallfiguresclosed (第 16 行)
计算 UIControl Callback 时出错。

Key parameters updated/changed. Re-run wavelet : done
请求的数组超过允许的最大变量大小。

出错 wave_readGUI (第 236 行)

出错 waveletGUI>pushbutton2_Callback (第 501 行)

出错 gui_mainfcn (第 95 行)

出错 waveletGUI (第 42 行)

出错 matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)waveletGUI('pushbutton2_Callback',hObject,eventdata,guidata(hObject))

错误使用 waitforallfiguresclosed (第 16 行)
计算 UIControl Callback 时出错。

Add option to plot spectra as a function of period in stead of/in addition to frequency or add period on point click hover info

Many students are interested in the periods of their spectral peaks. Plotting against frequency is common, but it may be nice to add one of several suggestions below:

add an option to plot against period in stead of frequency (most people would be agains this, however)
add an option for a secondary x-axis above, with the period info. This would be a non-linear axis though
when you click any of the points/peaks in a spectrum, show the period in addition to the x- and y-values

Initial run and *.dll error: the ordinal **** is not found in the library *.dll

When I run Acycle I get the error:

"C:\Windows\system32\libmwflcertificates.dll". The ordinal 4739 is not found in the library libmwflcertificates.dll.

"C:\Windows\system32\ssleay32.dll". The ordinal 4540 is not found in the library ssleay32.dll.

mingsongli / acycle Goto Github PK

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